1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf12, ycf2, ycf4 Other genes chlB, chlL, chlN, lhbA Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II psbZ Large subunit of ribosome None Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf1, ycf15 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [14940:15098](-) [13788:14198](-) clpP (3/3) [76770:76838](-) [75700:75990](-) [74880:75119](-) ndhA (1/2) [128162:128791](+) ndhB (3/2) [103676:103720](-) [102939:103661](-) [101442:102203](-) petB (1/2) [80528:81184](+) petD (1/2) [82164:82637](+) rpl16 (1/2) [85979:86395](-) rpl2 (2/2) [90008:90403](-) [88856:89287](-) rpoC1 (2/2) [24984:25415](-) [22665:24287](-) rps12 (2/3) [74628:74741](-) [105139:105393](-) rps12_copy2 (2/3) [74628:74741](-) [150852:151106](+) rps16 (2/2) [6232:6270](-) [5225:5416](-) ycf3 (3/3) [48683:48811](-) [47751:47978](-) [46868:47023](-) ### The exon column shows the number of (actual exons/expected exons). ### Uncommon intron-contained genes: rpl22 2 [88130:88483](-) [88079:88117](-)] 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon psbI ATT rpoC1 ATC atpB ATT cemA ATT petL ATT petB ATT rps8 ATT rpl16 ATC chlL ATT ndhA ATT 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 131 genes (119 unique genes). Including: 84 protein-coding genes (82 are unique) 40 tRNA genes (32 are unique) 7 rRNA genes (5 are unique) Details are as follows: 84 protein-coding genes (82 are unique) Genes Length Location accD 972 [61957:62928](+) atpA 1533 [12212:13744](-) atpB 1464 [57662:59125](-) atpE 417 [57237:57653](-) atpF 570 [14940:15098](-) [13788:14198](-) atpH 246 [15439:15684](-) atpI 747 [16546:17292](-) ccsA 1020 [133361:134380](-) cemA 705 [65590:66294](+) chlB 1542 [6449:7990](-) chlL 921 [116921:117841](+) chlN 1380 [117891:119270](+) clpP 600 [76770:76838](-) [75700:75990](-) [74880:75119](-) infA 249 [84601:84849](-) lhbA 189 [40533:40721](+) matK 1539 [2152:3690](-) ndhA 630 [128162:128791](+) ndhB 1530 [103676:103720](-) [102939:103661](-) [101442:102203](-) ndhC 408 [54270:54677](-) ndhD 1506 [131614:133119](+) ndhE 303 [130469:130771](+) ndhF 1557 [136956:138512](+) ndhG 543 [129785:130327](+) ndhH 1176 [125529:126704](+) ndhI 543 [128962:129504](+) ndhJ 477 [52991:53467](-) ndhK 957 [53479:54435](-) petA 963 [66536:67498](+) petB 657 [80528:81184](+) petD 474 [82164:82637](+) petG 114 [71458:71571](+) petL 108 [71195:71302](+) petN 90 [30350:30439](+) psaA 2253 [44021:46273](-) psaB 2205 [41791:43995](-) psaC 246 [131229:131474](+) psaI 111 [63451:63561](+) psaJ 135 [72317:72451](+) psbA 1062 [345:1406](-) psbB 1527 [77317:78843](+) psbC 1380 [38438:39817](+) psbD 1008 [37483:38490](+) psbE 252 [69136:69387](-) psbF 120 [69007:69126](-) psbH 228 [79398:79625](+) psbI 162 [9579:9740](+) psbJ 123 [68632:68754](-) psbK 177 [8660:8836](+) psbL 117 [68868:68984](-) psbM 105 [31779:31883](-) psbN 132 [79183:79314](-) psbT 108 [79002:79109](+) rbcL 1428 [59807:61234](+) rpl14 369 [85500:85868](-) rpl16 417 [85979:86395](-) rpl2 828 [90008:90403](-) [88856:89287](-) rpl20 348 [73574:73921](-) rpl22 393 [88130:88483](-) [88079:88117](-) rpl23 81 [90444:90524](-) rpl32 210 [135604:135813](-) rpl33 201 [72799:72999](+) rpl36 114 [84391:84504](-) rpoA 1023 [82810:83832](-) rpoB 3219 [25445:28663](-) rpoC1 2055 [24984:25415](-) [22665:24287](-) rpoC2 4110 [18438:22547](-) rps11 393 [83893:84285](-) rps12 369 [74628:74741](-) [105139:105393](-) rps12_copy2 369 [74628:74741](-) [150852:151106](+) rps14 303 [41357:41659](-) rps15 267 [125153:125419](+) rps16 231 [6232:6270](-) [5225:5416](-) rps18 252 [73124:73375](+) rps19 279 [88523:88801](-) rps2 699 [17562:18260](-) rps3 657 [87408:88064](-) rps4 612 [49988:50599](-) rps7 468 [104041:104508](-) rps7_copy2 468 [151737:152204](+) rps8 417 [84973:85389](-) ycf12 102 [10645:10746](+) ycf2 7269 [91814:99082](+) ycf3 513 [48683:48811](-) [47751:47978](-) [46868:47023](-) ycf4 555 [64105:64659](+) 40 tRNA genes (32 are unique) Genes Location trnH-GUG [25:99](-) trnK-UUU [4441:4477](-) [1942:1970](-) trnQ-UUG [8210:8282](-) trnS-GCU [9882:9969](-) trnG-GCC [10910:10932](+) [11776:11823](+) trnR-UCU [12046:12117](+) trnC-GCA [29928:29998](+) trnD-GUC [34120:34193](-) trnY-GUA [34466:34549](-) trnE-UUC [34609:34681](-) trnT-GGU [35960:36031](+) trnM-CAU [35961:36024](+) trnS-UGA [40046:40133](-) trnG-UCC [40978:41048](+) trnfM-CAU [41170:41240](-) trnS-GGA [49548:49634](-) trnT-UGU [50880:50952](-) trnL-UAA [51870:51919](-) [51335:51368](-) trnF-GAA [52283:52355](+) trnV-UAC [56841:56878](-) [56265:56301](-) trnM-CAU_copy2 [57058:57130](+) trnR-CCG [61513:61586](+) trnW-CCA [71691:71764](+) trnP-UGG [71930:72003](-) trnI-CAU [90909:90982](-) trnH-GUG_copy2 [91359:91431](+) trnL-CAA [100729:100809](+) trnV-GAC [107182:107252](+) trnI-GAU [109075:109111](+) [110052:110086](+) trnA-UGC [111152:111186](-) [110335:110372](-) trnR-ACG [114946:115019](+) trnN-GUU [115754:115825](-) trnL-UAG [134523:134602](-) trnP-GGG [134743:134816](+) trnN-GUU_copy2 [140420:140491](+) trnR-ACG_copy2 [141226:141299](-) trnA-UGC_copy2 [145873:145910](-) [145059:145093](-) trnI-GAU_copy2 [147134:147170](-) [146159:146193](-) trnV-GAC_copy2 [148993:149063](-) trnL-CAA_copy2 [155436:155516](+) 7 rRNA genes (5 are unique) Genes Location rrn16 [107448:108938](+) rrn23 [111334:114134](+) rrn45 [114252:114354](+) rrn5 [114604:114738](+) rrn4 [141891:141993](-) rrn23_copy2 [142098:144898](-) rrn16_copy2 [147307:148797](-) This genome has 18 genes with intron(s). Details are as follows: 15 gene(s) have 1 intron(s) Genes Exons rps12 [74628:74741](-) [105139:105393](-) rps16 [6232:6270](-) [5225:5416](-) atpF [14940:15098](-) [13788:14198](-) rpoC1 [24984:25415](-) [22665:24287](-) rps12_copy2 [74628:74741](-) [150852:151106](+) rpl22 [88130:88483](-) [88079:88117](-) rpl2 [90008:90403](-) [88856:89287](-) trnK-UUU [4441:4477](-) [1942:1970](-) trnG-GCC [10910:10932](+) [11776:11823](+) trnL-UAA [51870:51919](-) [51335:51368](-) trnV-UAC [56841:56878](-) [56265:56301](-) trnI-GAU [109075:109111](+) [110052:110086](+) trnA-UGC [111152:111186](-) [110335:110372](-) trnA-UGC_copy2 [145873:145910](-) [145059:145093](-) trnI-GAU_copy2 [147134:147170](-) [146159:146193](-) 3 gene(s) have 2 intron(s) Genes Exons ycf3 [48683:48811](-) [47751:47978](-) [46868:47023](-) clpP [76770:76838](-) [75700:75990](-) [74880:75119](-) ndhB [103676:103720](-) [102939:103661](-) [101442:102203](-)