1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps15, rps19, rps2, rps3, rps4, rps7, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor None Conserved open reading frames ycf2 Other genes lhbA Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II psbZ Large subunit of ribosome rpl22 Small subunit of ribosome rps16, rps18 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf4 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [47785:47952](+) [48620:49030](+) clpP (2/3) [63086:63448](+) [63994:64224](+) ndhA (2/2) [111159:111722](+) [112892:113431](+) ndhB (2/2) [92029:92751](-) [90588:91343](-) petB (2/2) [71919:71924](+) [72715:73368](+) petD (2/2) [73563:73571](+) [74285:74758](+) rpl16 (2/2) [80061:80069](-) [78563:78961](-) rpl2 (2/2) [82854:83246](-) [81727:82197](-) rpoC1 (2/2) [37293:37727](+) [38500:40131](+) rps12 (2/3) [64490:64606](+) [93416:93673](-) ycf3 (3/3) [15807:15932](+) [16671:16898](+) [17648:17800](+) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon psbL ACA rps8 ATC ndhD AAT 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 103 genes (101 unique genes). Including: 73 protein-coding genes (73 are unique) 30 tRNA genes (28 are unique) 0 rRNA genes (0 are unique) Details are as follows: Nonstandard gene annotation ('/gene' tags possibly be missing in your GenBank file) 16S ribosomal RNA [95661:97152](+) 23S ribosomal RNA [99492:102290](+) 4.5S ribosomal RNA [102408:102511](+) 5S ribosomal RNA [102742:102863](+) 73 protein-coding genes (73 are unique) Genes Length Location accD 495 [56855:57349](+) atpA 1533 [49118:50650](+) atpB 1470 [6916:8385](+) atpE 426 [8414:8839](+) atpF 579 [47785:47952](+) [48620:49030](+) atpH 246 [47047:47292](+) atpI 744 [45610:46353](+) ccsA 954 [118031:118984](-) cemA 690 [59087:59776](+) clpP 594 [63086:63448](+) [63994:64224](+) lhbA 189 [24151:24339](-) matK 1524 [1967:3490](-) ndhA 1104 [111159:111722](+) [112892:113431](+) ndhB 1479 [92029:92751](-) [90588:91343](-) ndhC 363 [10226:10588](+) ndhD 1491 [116341:117831](+) ndhE 306 [115338:115643](+) ndhF 2229 [120488:122716](+) ndhG 531 [114573:115103](+) ndhH 1182 [109976:111157](+) ndhI 501 [113511:114011](+) ndhJ 477 [11454:11930](+) ndhK 684 [10631:11314](+) petA 963 [60000:60962](+) petB 660 [71919:71924](+) [72715:73368](+) petD 483 [73563:73571](+) [74285:74758](+) petG 114 [68377:68490](-) petL 96 [68641:68736](-) petN 90 [31741:31830](-) psaA 2277 [18184:20460](+) psaB 2205 [20486:22690](+) psaC 246 [115960:116205](+) psaI 105 [57769:57873](+) psaJ 129 [67244:67372](-) psbA 1062 [313:1374](-) psbB 1527 [69439:70965](+) psbC 1422 [24991:26412](-) psbD 1062 [26360:27421](-) psbE 252 [62356:62607](-) psbF 120 [62227:62346](-) psbH 222 [71556:71777](+) psbI 111 [52045:52155](+) psbJ 123 [61825:61947](-) psbK 186 [51679:51864](+) psbL 114 [62088:62201](-) psbM 105 [30829:30933](+) psbN 132 [71320:71451](-) psbT 108 [71146:71253](+) rbcL 1428 [4722:6149](-) rpl14 369 [78074:78442](-) rpl16 408 [80061:80069](-) [78563:78961](-) rpl2 864 [82854:83246](-) [81727:82197](-) rpl20 369 [65331:65699](+) rpl23 282 [83267:83548](-) rpl32 153 [119703:119855](-) rpl33 201 [66555:66755](-) rpl36 114 [76758:76871](-) rpoA 1002 [74962:75963](-) rpoB 3213 [34054:37266](+) rpoC1 2067 [37293:37727](+) [38500:40131](+) rpoC2 4122 [40312:44433](+) rps11 417 [76043:76459](-) rps12 375 [64490:64606](+) [93416:93673](-) rps14 303 [22939:23241](+) rps15 273 [109604:109876](+) rps19 279 [81266:81544](-) rps2 696 [44690:45385](+) rps3 669 [80216:80884](-) rps4 597 [14642:15238](+) rps7 468 [92897:93364](-) rps8 399 [77289:77687](-) ycf2 5484 [84405:89888](+) ycf3 507 [15807:15932](+) [16671:16898](+) [17648:17800](+) 30 tRNA genes (28 are unique) Genes Location trnK-UUU [4200:4236](-) [1691:1719](-) trnM-CAU [8942:9014](-) trnV-UAC [9190:9228](+) [9801:9837](+) trnF-GAA [12620:12692](-) trnL-UAA [13259:13295](-) [12781:12830](-) trnT-UGU [14239:14311](+) trnS-GGA [15453:15540](-) trnfM-CAU [23416:23487](+) trnG-UCC [23594:23664](-) trnS-UGA [24679:24771](+) trnT-GGU [28876:28947](-) trnM-CAU_copy2 [28883:28941](-) trnE-UUC [29711:29783](+) trnY-GUA [29844:29927](+) trnD-GUC [30361:30434](+) trnS-GCU [52297:52383](-) trnR-UCU [54052:54123](+) trnQ-UUG [54573:54642](+) trnQ-UUG_copy2 [54744:54814](+) trnP-UGG [67927:68001](+) trnP-GGG [67929:67999](+) trnW-CCA [68154:68227](+) trnL-CAA [90036:90116](-) trnV-GAC [95275:95346](+) trnI-GAU [97630:97671](+) [98346:98380](+) trnA-UGC [98446:98483](+) [99292:99326](+) trnR-ACG [103126:103199](+) trnN-GUU [103417:103489](-) trnL-UAG [119118:119197](-) trnH-GUG [122914:122967](-) 0 rRNA genes (0 are unique) Genes Location This genome has 16 genes with intron(s). Details are as follows: 15 gene(s) have 1 intron(s) Genes Exons rpoC1 [37293:37727](+) [38500:40131](+) atpF [47785:47952](+) [48620:49030](+) clpP [63086:63448](+) [63994:64224](+) rps12 [64490:64606](+) [93416:93673](-) petB [71919:71924](+) [72715:73368](+) petD [73563:73571](+) [74285:74758](+) rpl16 [80061:80069](-) [78563:78961](-) rpl2 [82854:83246](-) [81727:82197](-) ndhB [92029:92751](-) [90588:91343](-) ndhA [111159:111722](+) [112892:113431](+) trnK-UUU [4200:4236](-) [1691:1719](-) trnV-UAC [9190:9228](+) [9801:9837](+) trnL-UAA [13259:13295](-) [12781:12830](-) trnI-GAU [97630:97671](+) [98346:98380](+) trnA-UGC [98446:98483](+) [99292:99326](+) 1 gene(s) have 2 intron(s) Genes Exons ycf3 [15807:15932](+) [16671:16898](+) [17648:17800](+)