1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene None Envelop membrane protein cemA Maturase None Protease None Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor None Conserved open reading frames ycf19, ycf20, ycf21, ycf22, ycf23, ycf29, ycf33, ycf34, ycf35, ycf36, ycf37, ycf38, ycf39, ycf4, ycf45, ycf46, ycf52, ycf53, ycf54, ycf55, ycf58, ycf60, ycf63, ycf65, ycf80 Other genes ConsOrf1, ConsOrf2, ConsOrf3, ConsOrf4, ConsOrf5, accA, accB, acpP, acsF, apcA, apcB, apcD, apcE, apcF, argB, atpD, atpG, bas1, carA, cbbX, ccs1, ccs1_copy2, chlI, clpC, cpcA, cpcB, cpcG, cpeA, cpeB, dnaB, dnaK, dsbD, fabH, ftrB, ftsH, gltB, groEL, ilvB, ilvH, infB, infC, lysR, moeB, nblA, ntcA, odpA, odpB, ompR, orf183, orf33, orf34, orf34b, orf34c, orf40, orf40b, orf43, orf50, pbsA, petF, petJ, petM, petP, pgmA, preA, psaD, psaE, psaF, psaK, psaL, psaM, psb30, psbV, psbW, psbX, psbY, rbcS, rne, rnz, rpl1, rpl11, rpl12, rpl13, rpl18, rpl19, rpl21, rpl24, rpl27, rpl28, rpl29, rpl3, rpl31, rpl34, rpl35, rpl4, rpl5, rpl6, rpl9, rpoZ, rps1, rps10, rps13, rps17, rps20, rps5, rps6, rps9, secA, secG, secY, sufB, sufC, syfB, syh, tatC, thiG, thiS, tilS, trpA, trpG, trxA, tsf, tufA, upp Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II psbM Large subunit of ribosome None Small subunit of ribosome rps15 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene ccsA Envelop membrane protein None Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf2 Other genes None 2. Multicopy genes with different lengths: Genes Length Location ccs1 1365 [24019:25384](+) ccs1_copy2 954 [49611:50565](-) 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (1/2) [78423:78959](-) petB (1/2) [159337:159984](-) petD (1/2) [158827:159309](-) rpl16 (1/2) [129323:129739](+) rpl2 (1/2) [127107:127934](+) rpoC1 (1/2) [87281:89185](-) rps12 (1/3) [137784:138158](+) rps16 (1/2) [169701:169931](-) ycf3 (1/3) [96971:97486](+) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon psaF GTG chlI GTG psbF GTG orf50 TTG infC TTG rbcS GTG trxA TTG ConsOrf1 GTG petN GTG orf40b TTG petP TTG orf33 TTG orf34c TTG rps11 GTG ycf29 GTG ycf65 TTG psbC GTG ompR TTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 239 genes (229 unique genes). Including: 207 protein-coding genes (206 are unique) 29 tRNA genes (20 are unique) 3 rRNA genes (3 are unique) Details are as follows: 207 protein-coding genes (206 are unique) Genes Length Location ConsOrf1 198 [64640:64837](+) ConsOrf2 267 [55689:55955](+) ConsOrf3 510 [168799:169308](-) ConsOrf4 798 [73092:73889](+) ConsOrf5 1062 [67671:68732](-) accA 987 [48211:49197](+) accB 534 [116665:117198](+) accD 864 [10987:11850](+) acpP 261 [114233:114493](-) acsF 1050 [112432:113481](+) apcA 486 [100117:100602](-) apcB 486 [99561:100046](-) apcD 489 [8859:9347](+) apcE 2640 [100812:103451](-) apcF 522 [55068:55589](-) argB 861 [146833:147693](-) atpA 1518 [76304:77821](-) atpB 1422 [97627:99048](+) atpD 555 [77872:78426](-) atpE 405 [99065:99469](+) atpF 537 [78423:78959](-) atpG 477 [79017:79493](-) atpH 249 [79606:79854](-) atpI 747 [79983:80729](-) bas1 597 [110252:110848](-) carA 1179 [13107:14285](+) cbbX 900 [60588:61487](-) ccs1 1365 [24020:25384](+) ccs1_copy2 954 [49612:50565](-) cemA 837 [69525:70361](-) chlI 1047 [28325:29371](+) clpC 2460 [150631:153090](+) cpcA 489 [39876:40364](-) cpcB 519 [40418:40936](-) cpcG 696 [53850:54545](+) cpeA 495 [50719:51213](-) cpeB 534 [51281:51814](-) dnaB 1833 [153376:155208](-) dnaK 1872 [123422:125293](-) dsbD 735 [23167:23901](+) fabH 1011 [9597:10607](+) ftrB 351 [31847:32197](+) ftsH 1869 [144567:146435](+) gltB 4593 [41515:46107](+) groEL 1587 [167207:168793](+) ilvB 1761 [148006:149766](+) ilvH 537 [59408:59944](+) infB 2289 [94572:96860](-) infC 525 [58757:59281](-) lysR 948 [16497:17444](-) moeB 1071 [155802:156872](-) nblA 174 [53411:53584](-) ntcA 639 [160120:160758](-) odpA 1038 [106568:107605](-) odpB 975 [105535:106509](-) ompR 735 [173816:174550](-) orf183 522 [52222:52743](-) orf33 102 [117219:117320](-) orf34 105 [26856:26960](+) orf34b 105 [66929:67033](+) orf34c 105 [121889:121993](-) orf40 123 [82526:82648](+) orf40b 123 [112253:112375](-) orf43 132 [63715:63846](+) orf50 153 [53189:53341](-) pbsA 696 [109405:110100](-) petA 960 [104493:105452](+) petB 648 [159337:159984](-) petD 483 [158827:159309](-) petF 297 [140337:140633](-) petG 114 [122417:122530](-) petJ 342 [12671:13012](+) petL 96 [65749:65844](+) petM 99 [112012:112110](-) petN 93 [112128:112220](-) petP 102 [116407:116508](+) pgmA 1557 [38125:39681](-) preA 975 [107788:108762](+) psaA 2259 [117409:119667](+) psaB 2205 [119680:121884](+) psaC 246 [46237:46482](+) psaD 426 [113621:114046](+) psaE 186 [144185:144370](-) psaF 555 [7997:8551](+) psaI 111 [31530:31640](-) psaJ 129 [8590:8718](+) psaK 261 [49244:49504](-) psaL 453 [65140:65592](-) psaM 93 [28063:28155](+) psb30 105 [32508:32612](-) psbA 1083 [21108:22190](-) psbB 1530 [141932:143461](+) psbC 1386 [171060:172445](-) psbD 1056 [172429:173484](-) psbE 255 [30687:30941](+) psbF 135 [30956:31090](+) psbH 204 [143911:144114](+) psbI 117 [71123:71239](-) psbJ 120 [31310:31429](+) psbK 138 [122627:122764](-) psbL 117 [31105:31221](+) psbN 132 [143698:143829](-) psbT 96 [143518:143613](+) psbV 495 [12060:12554](+) psbW 342 [165120:165461](-) psbX 120 [10728:10847](+) psbY 105 [17602:17706](+) psbZ 189 [123015:123203](+) rbcL 1467 [62168:63634](-) rbcS 417 [61637:62053](-) rne 1509 [19471:20979](+) rnz 678 [18035:18712](+) rpl1 699 [157613:158311](+) rpl11 435 [157160:157594](+) rpl12 396 [158356:158751](+) rpl13 444 [136535:136978](+) rpl14 369 [130182:130550](+) rpl16 417 [129323:129739](+) rpl18 309 [132420:132728](+) rpl19 369 [150097:150465](-) rpl2 828 [127107:127934](+) rpl20 363 [108759:109121](-) rpl21 327 [18777:19103](+) rpl22 357 [128247:128603](+) rpl23 306 [126774:127079](+) rpl24 243 [130556:130798](+) rpl27 255 [19131:19385](+) rpl28 195 [64265:64459](+) rpl29 192 [129753:129944](+) rpl3 621 [125493:126113](+) rpl31 207 [137466:137672](+) rpl32 165 [17809:17973](+) rpl33 201 [93209:93409](+) rpl34 126 [6332:6457](-) rpl35 201 [109146:109346](-) rpl36 114 [134546:134659](+) rpl4 666 [126116:126781](+) rpl5 546 [130798:131343](+) rpl6 537 [131847:132383](+) rpl9 465 [155220:155684](-) rpoA 921 [135552:136472](+) rpoB 3354 [89194:92547](-) rpoC1 1905 [87281:89185](-) rpoC2 3654 [83610:87263](-) rpoZ 237 [41079:41315](-) rps1 786 [161843:162628](-) rps10 309 [139954:140262](+) rps11 390 [135118:135507](+) rps12 375 [137784:138158](+) rps13 381 [134700:135080](+) rps14 303 [122028:122330](+) rps16 231 [169701:169931](-) rps17 237 [129946:130182](+) rps18 213 [93447:93659](+) rps19 279 [127965:128243](+) rps2 702 [81553:82254](-) rps20 285 [92748:93032](-) rps3 651 [128612:129262](+) rps4 606 [58063:58668](-) rps5 513 [132764:133276](+) rps6 318 [27606:27923](+) rps7 471 [138165:138635](+) rps8 399 [131403:131801](+) rps9 411 [136994:137404](+) secA 2616 [34931:37546](-) secG 210 [111629:111838](-) secY 1236 [133282:134517](+) sufB 1461 [73975:75435](+) sufC 753 [75446:76198](+) syfB 1974 [163115:165088](-) syh 1260 [165680:166939](-) tatC 732 [103666:104397](+) thiG 843 [25961:26803](-) thiS 213 [161611:161823](+) tilS 996 [32712:33707](-) trpA 801 [33891:34691](+) trpG 567 [25376:25942](-) trxA 321 [63911:64231](+) tsf 624 [80875:81498](-) tufA 1230 [138694:139923](+) upp 552 [170330:170881](-) ycf19 291 [170005:170295](-) ycf20 267 [54674:54940](-) ycf21 486 [37555:38040](-) ycf22 657 [47506:48162](+) ycf23 813 [46643:47455](+) ycf29 621 [160833:161453](+) ycf3 516 [96971:97486](+) ycf33 198 [147762:147959](+) ycf34 237 [59968:60204](-) ycf35 396 [22425:22820](+) ycf36 495 [111085:111579](-) ycf37 489 [6556:7044](+) ycf38 900 [140924:141823](+) ycf39 969 [71424:72392](-) ycf4 546 [65940:66485](+) ycf45 1689 [114606:116294](-) ycf46 1464 [4802:6265](-) ycf52 531 [7285:7815](-) ycf53 717 [14324:15040](-) ycf54 303 [16189:16491](+) ycf55 927 [15115:16041](-) ycf58 474 [70551:71024](+) ycf60 600 [26965:27564](+) ycf63 786 [29728:30513](+) ycf65 300 [169383:169682](-) ycf80 1443 [56570:58012](+) 29 tRNA genes (20 are unique) Genes Location trnI [1517:1590](+) trnA [1598:1670](+) trnP [7113:7186](-) trnL [22856:22938](-) trnN [23057:23130](+) trnR [29386:29460](-) trnV [29517:29589](-) trnK [33771:33842](+) trnE [34720:34792](-) trnR_copy2 [56015:56089](+) trnL_copy2 [60305:60390](-) trnC [60431:60501](-) trnT [65025:65097](+) trnG [66570:66640](+) trnM [69433:69469](-) [67469:67517](-) trnL_copy3 [72918:72998](-) trnM_copy2 [110971:111046](-) trnS [114118:114205](+) trnG_copy2 [123325:123396](+) trnD [146454:146529](-) trnS_copy2 [146576:146664](-) trnM_copy3 [146703:146778](-) trnY [149815:149896](-) trnV_copy2 [149975:150048](-) trnF [153182:153254](-) trnW [156956:157030](+) trnH [161455:161528](-) trnQ [165567:165640](-) trnR_copy3 [167001:167076](-) 3 rRNA genes (3 are unique) Genes Location rns [1:1476](+) rnl [1748:4618](+) rrn5 [4652:4769](+) This genome has 1 genes with intron(s). Details are as follows: 1 gene(s) have 1 intron(s) Genes Exons trnM [69433:69469](-) [67469:67517](-)