1.
Annotated protein coding genes:
Group of genes                                  	Name of genes
Subunits of ATP synthase                        	None
Subunits of NADH-dehydrogenase            	None
Subunits of cytochrome b/f complex          	None
Subunits of photosystem I                       	None
Subunits of photosystem II                      	None
Large subunit of ribosome                       	rpl14, rpl16, rpl2, rpl20, rpl36
Small subunit of ribosome                       	rps11, rps12, rps14, rps18, rps19, rps2, rps3, rps4, rps7, rps8
DNA dependent RNA polymerase              	None
Subunit of rubisco                              	None
c-type cytochrom synthesis gene             	None
Envelop membrane protein                        	None
Maturase                                              	matK
Protease                                              	clpP
Subunit of Acetyl-CoA-carboxylase           	accD
Translational initiation factor             	None
Conserved open reading frames             	ycf1, ycf2
Other genes                                           	None

Possible missing protein coding genes:
Group of genes                                  	Name of genes
Subunits of ATP synthase                        	atpA, atpB, atpE, atpF, atpH, atpI
Subunits of NADH-dehydrogenase            	ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
Subunits of cytochrome b/f complex          	petA, petB, petD, petG, petL, petN
Subunits of photosystem I                       	psaA, psaB, psaC, psaI, psaJ
Subunits of photosystem II                      	psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3
Large subunit of ribosome                       	rpl22, rpl23, rpl32, rpl33
Small subunit of ribosome                       	rps15, rps16
DNA dependent RNA polymerase              	rpoA, rpoB, rpoC1, rpoC2
Subunit of rubisco                              	rbcL
c-type cytochrom synthesis gene             	ccsA
Envelop membrane protein                        	cemA
Maturase                                              	None
Protease                                              	None
Subunit of Acetyl-CoA-carboxylase           	None
Translational initiation factor             	infA
Conserved open reading frames             	ycf15, ycf4
Other genes                                           	None

2.
Multicopy genes with different lengths:
Genes             	Length  	Location
None              	None    	None

3.
Common intron-contained genes:
Genes           	exons 	exon1 	exon2 	exon3
clpP               	(3/3)     	[10375:10437](-)	[9345:9629](-)	[8421:8690](-)	
rpl16               	(2/2)     	[13470:13478](-)	[12178:12615](-)	
rpl2               	(2/2)     	[32835:32909](+)	[33590:33976](+)	
rps12               	(3/3)     	[8193:8306](-)	[14743:14974](-)	[14149:14174](-)	

### The exon column shows the number of (actual exons/expected exons). ###


4.
Genes with internal stop codon:
None

5.
Genes with nonstandard start codon:
Genes             	Start codon
None              	None

6.
Genes with nonstandard stop codon:
Genes             	Stop codon
None              	None

7. Conclusion
This genome has 28 genes (28 unique genes). Including:
20 protein-coding genes (20 are unique)
5 tRNA genes (5 are unique)
3 rRNA genes (3 are unique)

Details are as follows:

20 protein-coding genes (20 are unique)
Genes             	Length  	Location
accD              	1458    	[5062:6519](+)	
clpP              	618     	[10375:10437](-)	[9345:9629](-)	[8421:8690](-)	
matK              	1200    	[1:1200](-)	
rpl14             	360     	[11714:12073](-)	
rpl16             	447     	[13470:13478](-)	[12178:12615](-)	
rpl2              	462     	[32835:32909](+)	[33590:33976](+)	
rpl20             	339     	[7289:7627](-)	
rpl36             	114     	[11022:11135](-)	
rps11             	399     	[10559:10957](-)	
rps12             	372     	[8193:8306](-)	[14743:14974](-)	[14149:14174](-)	
rps14             	303     	[3602:3904](+)	
rps18             	234     	[6939:7172](+)	
rps19             	102     	[34196:34297](+)	
rps2              	726     	[1847:2572](-)	
rps3              	648     	[34392:35039](+)	
rps4              	591     	[4100:4690](-)	
rps7              	369     	[13632:14000](-)	
rps8              	399     	[11193:11591](-)	
ycf1              	4893    	[15409:20301](-)	
ycf2              	6192    	[25952:32143](-)	

5 tRNA genes (5 are unique)
Genes          	Location
trnQ-UUG       	[1723:1794](-)	
trnC-GCA       	[2911:2991](-)	
trnE-UUC       	[3403:3475](-)	
trnfM-CAU      	[3946:4019](+)	
trnW-CCA       	[6649:6706](-)	

3 rRNA genes (3 are unique)
Genes          	Location
rrn5              	[20478:20605](-)	
rrn23             	[20909:23730](-)	
rrn16             	[24149:25639](-)	

This genome has 4 genes with intron(s).
Details are as follows:

2 gene(s) have 1 intron(s)
Genes	Exons
rpl16	[13470:13478](-)	[12178:12615](-)	
rpl2	[32835:32909](+)	[33590:33976](+)	

2 gene(s) have 2 intron(s)
Genes	Exons
rps12	[8193:8306](-)	[14743:14974](-)	[14149:14174](-)	
clpP	[10375:10437](-)	[9345:9629](-)	[8421:8690](-)