1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhC, ndhJ, ndhK Subunits of cytochrome b/f complex petN Subunits of photosystem I psaA, psaB Subunits of photosystem II psbA, psbC, psbD, psbI, psbK, psbM, psbZ, ycf3 Large subunit of ribosome None Small subunit of ribosome rps12, rps14, rps16, rps2, rps4 DNA dependent RNA polymerase rpoB, rpoC1, rpoC2 Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase matK Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames None Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhA, ndhB, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI Subunits of cytochrome b/f complex petA, petB, petD, petG, petL Subunits of photosystem I psaC, psaI, psaJ Subunits of photosystem II psbB, psbE, psbF, psbH, psbJ, psbL, psbN, psbT Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps15, rps18, rps19, rps3, rps7, rps8 DNA dependent RNA polymerase rpoA Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase None Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf2, ycf4 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [13148:13292](-) [12041:12450](-) rpoC1 (2/2) [23522:23951](-) [21181:22793](-) rps12 (3/3) [72846:72959](-) [101587:101818](-) [101025:101050](-) rps16 (2/2) [6044:6083](-) [4957:5183](-) ycf3 (3/3) [46357:46480](-) [45430:45659](-) [44540:44698](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon None None 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 48 genes (48 unique genes). Including: 29 protein-coding genes (29 are unique) 19 tRNA genes (19 are unique) 0 rRNA genes (0 are unique) Details are as follows: 29 protein-coding genes (29 are unique) Genes Length Location atpA 1524 [10448:11971](-) atpB 1491 [56569:58059](-) atpE 402 [56171:56572](-) atpF 555 [13148:13292](-) [12041:12450](-) atpH 246 [13754:13999](-) atpI 744 [15041:15784](-) matK 1512 [1975:3486](-) ndhC 363 [53212:53574](-) ndhJ 477 [51870:52346](-) ndhK 684 [52475:53158](-) petN 90 [29351:29440](+) psaA 2253 [41650:43902](-) psaB 2205 [39420:41624](-) psbA 1062 [387:1448](-) psbC 1422 [35947:37368](+) psbD 1062 [34938:35999](+) psbI 111 [8284:8394](+) psbK 186 [7682:7867](+) psbM 105 [30692:30796](-) psbZ 189 [37981:38169](+) rpoB 3216 [23978:27193](-) rpoC1 2043 [23522:23951](-) [21181:22793](-) rpoC2 4152 [16855:21006](-) rps12 372 [72846:72959](-) [101587:101818](-) [101025:101050](-) rps14 303 [38999:39301](-) rps16 267 [6044:6083](-) [4957:5183](-) rps2 711 [15975:16685](-) rps4 570 [47803:48372](-) ycf3 513 [46357:46480](-) [45430:45659](-) [44540:44698](-) 19 tRNA genes (19 are unique) Genes Location trnK-UUU [4180:4216](-) [1696:1730](-) trnQ-UUG [7287:7358](-) trnS-GCU [8484:8571](-) trnG-UCC [9315:9337](+) [10050:10095](+) trnR-UCU [10258:10329](+) trnC-GCA [28421:28491](+) trnD-GUC [31912:31985](-) trnY-GUA [32403:32491](-) trnE-UUC [32545:32617](-) trnT-GGU [33308:33379](+) trnS-UGA [37552:37644](-) trnG-GCC [38553:38623](+) trnfM-CAU [38765:38838](-) trnS-GGA [47395:47481](+) trnT-UGU [48705:48777](-) trnL-UAA [50116:50150](+) [50671:50720](+) trnF-GAA [51118:51189](+) trnV-UAC [55635:55672](-) [55010:55044](-) trnM-CAU [55855:55927](+) 0 rRNA genes (0 are unique) Genes Location This genome has 9 genes with intron(s). Details are as follows: 7 gene(s) have 1 intron(s) Genes Exons rps16 [6044:6083](-) [4957:5183](-) atpF [13148:13292](-) [12041:12450](-) rpoC1 [23522:23951](-) [21181:22793](-) trnK-UUU [4180:4216](-) [1696:1730](-) trnG-UCC [9315:9337](+) [10050:10095](+) trnL-UAA [50116:50150](+) [50671:50720](+) trnV-UAC [55635:55672](-) [55010:55044](-) 2 gene(s) have 2 intron(s) Genes Exons rps12 [72846:72959](-) [101587:101818](-) [101025:101050](-) ycf3 [46357:46480](-) [45430:45659](-) [44540:44698](-)