1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf15_copy2, ycf1_copy2, ycf2, ycf2_copy2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome None Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames None Other genes None 2. Multicopy genes with different lengths: Genes Length Location ycf15 198 [91957:92155](+) ycf15_copy2 249 [142353:142602](-) ycf1 1131 [107380:108511](+) ycf1_copy2 5565 [121566:127131](-) 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [12332:12475](-) [11235:11645](-) clpP (3/3) [70773:70841](-) [69788:70078](-) [68923:69159](-) ndhA (2/2) [119011:119562](-) [117448:117987](-) ndhB (2/2) [94496:95272](-) [93065:93820](-) ndhB_copy2 (2/2) [139237:140013](+) [140689:141444](+) petB (1/2) [74455:75114](+) petD (1/2) [75976:76500](+) rpl16 (1/2) [79930:80289](-) rpl2 (2/2) [83963:84361](-) [82883:83317](-) rpoC1 (2/2) [22650:23084](-) [20265:21884](-) rps12 (2/3) [68682:68807](-) [96598:96840](-) rps12_copy2 (2/3) [68682:68807](-) [137669:137911](+) rps16 (1/2) [4768:4971](-) ycf3 (3/3) [43319:43444](-) [42382:42609](-) [41495:41647](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps16 ATT petB ATT rps19 ATA ndhD CTG ycf1_copy2 GTG ycf15_copy2 GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 125 genes (110 unique genes). Including: 87 protein-coding genes (80 are unique) 38 tRNA genes (30 are unique) 0 rRNA genes (0 are unique) Details are as follows: Nonstandard gene annotation ('/gene' tags possibly be missing in your GenBank file) 16S ribosomal RNA [134241:135731](-) 23S ribosomal RNA [129002:131812](-) 4.5S ribosomal RNA [128801:128904](-) 5S ribosomal RNA [128425:128546](-) 87 protein-coding genes (80 are unique) Genes Length Location accD 1611 [56445:58055](+) atpA 1524 [9611:11134](-) atpB 1497 [52112:53608](-) atpE 402 [51714:52115](-) atpF 555 [12332:12475](-) [11235:11645](-) atpH 246 [12772:13017](-) atpI 744 [14036:14779](-) ccsA 972 [112148:113119](+) cemA 690 [60485:61174](+) clpP 597 [70773:70841](-) [69788:70078](-) [68923:69159](-) infA 234 [78484:78717](-) matK 1521 [1980:3500](-) ndhA 1092 [119011:119562](-) [117448:117987](-) ndhB 1533 [94496:95272](-) [93065:93820](-) ndhB_copy2 1533 [139237:140013](+) [140689:141444](+) ndhC 363 [49333:49695](-) ndhD 1530 [113338:114867](-) ndhE 306 [115459:115764](-) ndhF 2238 [108405:110642](-) ndhG 531 [115968:116498](-) ndhH 1182 [119564:120745](-) ndhI 507 [116861:117367](-) ndhJ 477 [48016:48492](-) ndhK 678 [48604:49281](-) petA 963 [61366:62328](+) petB 660 [74455:75114](+) petD 525 [75976:76500](+) petG 114 [65257:65370](+) petL 96 [64994:65089](+) petN 96 [27731:27826](+) psaA 2253 [38458:40710](-) psaB 2205 [36228:38432](-) psaC 246 [114958:115203](-) psaI 111 [58781:58891](+) psaJ 135 [66090:66224](+) psbA 1059 [381:1439](-) psbB 1527 [71298:72824](+) psbC 1422 [32828:34249](+) psbD 1062 [31819:32880](+) psbE 252 [63868:64119](-) psbF 120 [63734:63853](-) psbH 237 [73392:73628](+) psbI 111 [7384:7494](+) psbJ 123 [63337:63459](-) psbK 186 [6805:6990](+) psbL 117 [63594:63710](-) psbM 105 [28841:28945](-) psbN 132 [73173:73304](-) psbT 102 [73006:73107](+) psbZ 189 [34911:35099](+) rbcL 1455 [54368:55822](+) rpl14 369 [79430:79798](-) rpl16 360 [79930:80289](-) rpl2 834 [83963:84361](-) [82883:83317](-) rpl20 387 [67572:67958](-) rpl22 474 [81985:82458](-) rpl23 282 [84380:84661](-) rpl23_copy2 282 [149848:150129](+) rpl32 174 [111112:111285](+) rpl33 201 [66673:66873](+) rpl36 114 [78275:78388](-) rpoA 1008 [76672:77679](-) rpoB 3213 [23111:26323](-) rpoC1 2055 [22650:23084](-) [20265:21884](-) rpoC2 4170 [15931:20100](-) rps11 417 [77749:78165](-) rps12 369 [68682:68807](-) [96598:96840](-) rps12_copy2 369 [68682:68807](-) [137669:137911](+) rps14 303 [35803:36105](-) rps15 273 [120860:121132](-) rps16 204 [4768:4971](-) rps18 306 [67034:67339](+) rps19 288 [82540:82827](-) rps2 711 [15004:15714](-) rps3 663 [81338:82000](-) rps4 606 [44680:45285](-) rps7 468 [95526:95993](-) rps7_copy2 468 [138516:138983](+) rps8 405 [78854:79258](-) ycf1 1131 [107381:108511](+) ycf15 198 [91958:92155](+) ycf15_copy2 249 [142354:142602](-) ycf1_copy2 5565 [121567:127131](-) ycf2 6822 [84995:91816](+) ycf2_copy2 6822 [142693:149514](-) ycf3 507 [43319:43444](-) [42382:42609](-) [41495:41647](-) ycf4 555 [59336:59890](+) 38 tRNA genes (30 are unique) Genes Location trnH-GUG [5:79](-)