1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbM, psbN, psbT, psbZ Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl2_copy2, rpl32, rpl33 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps16, rps18, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhD Subunits of cytochrome b/f complex petB, petD Subunits of photosystem I None Subunits of photosystem II psbL, ycf3 Large subunit of ribosome rpl23, rpl36 Small subunit of ribosome rps19 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf1, ycf15, ycf2 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [13149:13299](-) [11944:12368](-) clpP (3/3) [72688:72756](-) [71484:71776](-) [70663:70888](-) ndhA (2/2) [121551:122124](-) [120012:120529](-) ndhB (2/2) [96169:96950](-) [94744:95521](-) ndhB_copy2 (2/2) [141498:142279](+) [142927:143704](+) rpl16 (1/2) [81980:82339](-) rpl2 (1/2) [85260:86084](-) rpl2_copy2 (1/2) [152364:153188](+) rpoC1 (2/2) [23364:23795](-) [20954:22591](-) rps12 (3/3) [70412:70525](-) [98330:98561](-) [97768:97793](-) rps12_copy2 (3/3) [70412:70525](-) [139887:140118](+) [140655:140680](+) rps16 (2/2) [6402:6443](-) [5298:5516](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon accD ATT psbH ATA 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 117 genes (100 unique genes). Including: 73 protein-coding genes (69 are unique) 36 tRNA genes (27 are unique) 8 rRNA genes (4 are unique) Details are as follows: 73 protein-coding genes (69 are unique) Genes Length Location accD 1485 [58144:59628](+) atpA 1524 [10350:11873](-) atpB 1497 [53691:55187](-) atpE 405 [53290:53694](-) atpF 576 [13149:13299](-) [11944:12368](-) atpH 246 [13754:13999](-) atpI 744 [14724:15467](-) ccsA 972 [114579:115550](+) cemA 702 [61357:62058](+) clpP 588 [72688:72756](-) [71484:71776](-) [70663:70888](-) infA 234 [80578:80811](-) matK 1512 [2110:3621](-) ndhA 1092 [121551:122124](-) [120012:120529](-) ndhB 1560 [96169:96950](-) [94744:95521](-) ndhB_copy2 1560 [141498:142279](+) [142927:143704](+) ndhC 363 [51020:51382](-) ndhE 306 [118005:118310](-) ndhF 2268 [110350:112617](-) ndhG 531 [118502:119032](-) ndhH 1182 [122126:123307](-) ndhI 513 [119391:119903](-) ndhJ 477 [49684:50160](-) ndhK 684 [50277:50960](-) petA 963 [62333:63295](+) petG 114 [66587:66700](+) petL 96 [66325:66420](+) petN 90 [28748:28837](+) psaA 2253 [40344:42596](-) psaB 2205 [38114:40318](-) psaC 246 [117357:117602](-) psaI 102 [60115:60216](+) psaJ 129 [67610:67738](+) psbA 1062 [519:1580](-) psbB 1527 [73193:74719](+) psbC 1422 [34538:35959](+) psbD 1062 [33529:34590](+) psbE 252 [64725:64976](-) psbF 120 [64597:64716](-) psbH 234 [75289:75522](+) psbI 111 [8026:8136](+) psbJ 123 [64196:64318](-) psbK 180 [7436:7615](+) psbM 105 [29672:29776](-) psbN 132 [75060:75191](-) psbT 114 [74887:75000](+) psbZ 189 [36675:36863](+) rbcL 1428 [55990:57417](+) rpl14 366 [81482:81847](-) rpl16 360 [81980:82339](-) rpl2 825 [85260:86084](-) rpl20 390 [69244:69633](-) rpl22 597 [84217:84813](-) rpl2_copy2 825 [152364:153188](+) rpl32 174 [113704:113877](+) rpl33 201 [68199:68399](+) rpoA 1026 [78680:79705](-) rpoB 3213 [23822:27034](-) rpoC1 2070 [23364:23795](-) [20954:22591](-) rpoC2 4101 [16647:20747](-) rps11 417 [79777:80193](-) rps12 372 [70412:70525](-) [98330:98561](-) [97768:97793](-) rps12_copy2 372 [70412:70525](-) [139887:140118](+) [140655:140680](+) rps14 303 [37684:37986](-) rps15 273 [123426:123698](-) rps16 261 [6402:6443](-) [5298:5516](-) rps18 306 [68687:68992](+) rps2 711 [15680:16390](-) rps3 657 [83543:84199](-) rps4 606 [46217:46822](-) rps7 468 [97247:97714](-) rps7_copy2 468 [140734:141201](+) rps8 405 [80930:81334](-) ycf4 555 [60500:61054](+) 36 tRNA genes (27 are unique) Genes Location trnH-GUG [23:97](-) trnK-UUU [4358:4394](-) [1793:1829](-) trnQ-UUG [7046:7117](-) trnS-GCU [8357:8444](-) trnR-UCU [10192:10263](+) trnC-GCA [28158:28228](+) trnD-GUC [30857:30930](-) trnY-GUA [31348:31431](-) trnE-UUC [31496:31568](-) trnT-UGU [32146:32217](+) trnS-UGA [36201:36293](-) trnG-UCC [37103:37172](+) trnfM-CAU [37451:37525](-) trnS-GCU_copy2 [45775:45861](+) trnT-UGU_copy2 [47105:47177](-) trnL-UAA [47940:47976](+) [48557:48606](+) trnF-GAA [48933:49005](+) trnV-UAC [52739:52776](-) [52108:52143](-) trnM-CAU [52956:53027](+) trnW-CCA [66833:66906](-) trnP-UGG [67097:67170](-) trnI-CAU [86539:86612](-) trnL-CAA [94090:94170](-) trnV-GAC [100032:100103](+) trnI-GAU [102114:102155](+) [103097:103131](+) trnA-UGC [103202:103239](+) [104067:104101](+) trnR-ACG [107905:107978](+) trnN-GUU [108556:108627](-) trnL-UAG [114412:114491](+) trnN-GUU_copy2 [129821:129892](+) trnR-ACG_copy2 [130470:130543](-) trnA-UGC_copy2 [135209:135246](-) [134347:134381](-) trnI-GAU_copy2 [136293:136334](-) [135317:135351](-) trnV-GAC_copy2 [138345:138416](-) trnL-CAA_copy2 [144276:144356](+) trnI-CAU_copy2 [151836:151909](+) 8 rRNA genes (4 are unique) Genes Location rrn16 [100331:101821](+) rrn23 [104259:107066](+) rrn4.5 [107164:107266](+) rrn5 [107530:107650](+) rrn5_copy2 [130798:130918](-) rrn4.5_copy2 [131182:131284](-) rrn23_copy2 [131382:134189](-) rrn16_copy2 [136627:138117](-) This genome has 16 genes with intron(s). Details are as follows: 13 gene(s) have 1 intron(s) Genes Exons rps16 [6402:6443](-) [5298:5516](-) atpF [13149:13299](-) [11944:12368](-) rpoC1 [23364:23795](-) [20954:22591](-) ndhB [96169:96950](-) [94744:95521](-) ndhA [121551:122124](-) [120012:120529](-) ndhB_copy2 [141498:142279](+) [142927:143704](+) trnK-UUU [4358:4394](-) [1793:1829](-) trnL-UAA [47940:47976](+) [48557:48606](+) trnV-UAC [52739:52776](-) [52108:52143](-) trnI-GAU [102114:102155](+) [103097:103131](+) trnA-UGC [103202:103239](+) [104067:104101](+) trnA-UGC_copy2 [135209:135246](-) [134347:134381](-) trnI-GAU_copy2 [136293:136334](-) [135317:135351](-) 3 gene(s) have 2 intron(s) Genes Exons rps12 [70412:70525](-) [98330:98561](-) [97768:97793](-) rps12_copy2 [70412:70525](-) [139887:140118](+) [140655:140680](+) clpP [72688:72756](-) [71484:71776](-) [70663:70888](-)