1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl2, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps18, rps19, rps2, rps3, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf15_copy2, ycf2, ycf2_copy2, ycf4 Other genes orf188 Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhD Subunits of cytochrome b/f complex petB Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome rpl16, rpl20, rpl32 Small subunit of ribosome rps16, rps4 DNA dependent RNA polymerase rpoA Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor None Conserved open reading frames None Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [13269:13412](-) [12161:12631](-) ndhA (2/2) [126169:126719](-) [124670:125210](-) ndhB (2/2) [96432:97208](-) [94997:95752](-) ndhB_copy2 (2/2) [146180:146956](+) [147636:148391](+) petD (1/2) [78135:78659](+) rpl2 (2/2) [86188:86580](-) [85064:85498](-) rpl2_copy2 (2/2) [156808:157200](+) [157890:158324](+) rpoC1 (2/2) [23649:24101](-) [21257:22834](-) rps12 (2/3) [70789:70902](-) [98555:98797](-) rps12_copy2 (2/3) [70789:70902](-) [144591:144833](+) ycf3 (3/3) [44670:44797](-) [43720:43946](-) [42835:42989](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rpoC1 ATA rps19 GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 123 genes (102 unique genes). Including: 78 protein-coding genes (71 are unique) 37 tRNA genes (27 are unique) 8 rRNA genes (4 are unique) Details are as follows: 78 protein-coding genes (71 are unique) Genes Length Location atpA 1524 [10572:12095](-) atpB 1491 [53773:55263](-) atpE 402 [53375:53776](-) atpF 615 [13269:13412](-) [12161:12631](-) atpH 246 [13789:14034](-) atpI 744 [15037:15780](-) ccsA 972 [119304:120275](+) cemA 690 [62332:63021](+) infA 234 [80653:80886](-) matK 1536 [1960:3495](-) ndhA 1092 [126169:126719](-) [124670:125210](-) ndhB 1533 [96432:97208](-) [94997:95752](-) ndhB_copy2 1533 [146180:146956](+) [147636:148391](+) ndhC 363 [50773:51135](-) ndhE 303 [122664:122966](-) ndhF 2229 [115434:117662](-) ndhG 531 [123193:123723](-) ndhH 1182 [126721:127902](-) ndhI 507 [124084:124590](-) ndhJ 477 [49465:49941](-) ndhK 678 [50042:50719](-) orf188 567 [126153:126719](-) petA 963 [63229:64191](+) petD 525 [78135:78659](+) petG 114 [67153:67266](+) petL 96 [66880:66975](+) petN 90 [29358:29447](+) psaA 2253 [39828:42080](-) psaB 2205 [37598:39802](-) psaC 246 [122136:122381](-) psaI 111 [60377:60487](+) psaJ 135 [68096:68230](+) psbA 1059 [384:1442](-) psbB 1527 [73445:74971](+) psbC 1422 [34146:35567](+) psbD 1062 [33137:34198](+) psbE 252 [65729:65980](-) psbF 120 [65595:65714](-) psbH 222 [75557:75778](+) psbI 111 [8381:8491](+) psbJ 123 [65199:65321](-) psbK 180 [7813:7992](+) psbL 117 [65455:65571](-) psbM 105 [30441:30545](-) psbN 132 [75320:75451](-) psbT 102 [75153:75254](+) psbZ 189 [36237:36425](+) rbcL 1440 [56028:57467](+) rpl14 369 [81600:81968](-) rpl2 828 [86188:86580](-) [85064:85498](-) rpl22 459 [84182:84640](-) rpl23 282 [86599:86880](-) rpl23_copy2 282 [156508:156789](+) rpl2_copy2 828 [156808:157200](+) [157890:158324](+) rpl33 201 [68698:68898](+) rpl36 114 [80444:80557](-) rpoB 3213 [24107:27319](-) rpoC1 2031 [23649:24101](-) [21257:22834](-) rpoC2 4176 [16927:21102](-) rps11 417 [79926:80342](-) rps12 357 [70789:70902](-) [98555:98797](-) rps12_copy2 357 [70789:70902](-) [144591:144833](+) rps14 303 [37173:37475](-) rps15 276 [115126:115401](+) rps18 312 [69059:69370](+) rps19 279 [84710:84988](-) rps2 711 [16006:16716](-) rps3 663 [83518:84180](-) rps7 468 [97483:97950](-) rps7_copy2 468 [145438:145905](+) rps8 405 [81011:81415](-) ycf1 5370 [128685:134054](-) ycf15 198 [93807:94004](+) ycf15_copy2 198 [149384:149581](-) ycf2 6357 [87309:93665](+) ycf2_copy2 6357 [149723:156079](-) ycf3 510 [44670:44797](-) [43720:43946](-) [42835:42989](-) ycf4 555 [60915:61469](+) 37 tRNA genes (27 are unique) Genes Location trnH-GUG [23:96](-) trnQ-UUG [7405:7476](-) trnS-GCU [8624:8711](-) trnR-UCU [10394:10465](+) trnC-GCA [28477:28547](+) trnD-GUC [31185:31258](-) trnY-GUA [31367:31450](-) trnE-UUC [31510:31582](-) trnM-CAU [32175:32233](+) trnS-UGA [35814:35905](-) trnG-GCC [36707:36777](+) trnfM-CAU [36950:37023](-) trnS-GGA [45649:45735](+) trnT-UGU [47010:47082](-) trnL-UAA [47791:47827](+) [48315:48364](+) trnF-GAA [48717:48789](+) trnV-UAC [52874:52911](-) [52258:52294](-) trnM-CAU_copy2 [53092:53164](+) trnT-GGU [53098:53156](+) trnW-CCA [67389:67462](-) trnP-UGG [67626:67699](-) trnM-CAU_copy3 [87131:87204](-) trnL-CAA [94369:94449](-) trnV-GAC [100407:100478](+) trnI-GAU [102494:102537](+) [103475:103511](+) trnA-UGC [103572:103611](+) [104423:104459](+) trnR-ACG [108244:108313](+) trnN-GUU [108878:108949](-) trnL-UAG [119141:119220](+) trnL-UAG_copy2 [119143:119222](+) trnN-GUU_copy2 [134439:134510](+) trnR-ACG_copy2 [135073:135146](-) trnA-UGC_copy2 [139777:139816](-) [138929:138965](-) trnI-GAU_copy2 [140851:140894](-) [139877:139913](-) trnV-GAC_copy2 [142910:142981](-) trnL-CAA_copy2 [148939:149019](+) trnM-CAU_copy4 [156184:156257](+) 8 rRNA genes (4 are unique) Genes Location rrn16 [100715:102198](+) rrn23 [104618:107422](+) rrn4.5 [107526:107624](+) rrn5 [107880:107996](+) rrn5_copy2 [135392:135508](-) rrn4.5_copy2 [135764:135862](-) rrn23_copy2 [135966:138770](-) rrn16_copy2 [141190:142673](-) This genome has 16 genes with intron(s). Details are as follows: 15 gene(s) have 1 intron(s) Genes Exons rps12 [70789:70902](-) [98555:98797](-) atpF [13269:13412](-) [12161:12631](-) rpoC1 [23649:24101](-) [21257:22834](-) rps12_copy2 [70789:70902](-) [144591:144833](+) rpl2 [86188:86580](-) [85064:85498](-) ndhB [96432:97208](-) [94997:95752](-) ndhA [126169:126719](-) [124670:125210](-) ndhB_copy2 [146180:146956](+) [147636:148391](+) rpl2_copy2 [156808:157200](+) [157890:158324](+) trnL-UAA [47791:47827](+) [48315:48364](+) trnV-UAC [52874:52911](-) [52258:52294](-) trnI-GAU [102494:102537](+) [103475:103511](+) trnA-UGC [103572:103611](+) [104423:104459](+) trnA-UGC_copy2 [139777:139816](-) [138929:138965](-) trnI-GAU_copy2 [140851:140894](-) [139877:139913](-) 1 gene(s) have 2 intron(s) Genes Exons ycf3 [44670:44797](-) [43720:43946](-) [42835:42989](-)