1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps15_copy2, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf2, ycf2_copy2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex petL Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome None Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf1, ycf15 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [32901:33045](+) [33879:34285](+) clpP (1/3) [67814:68464](-) ndhA (2/2) [113466:114014](-) [111894:112433](-) ndhB (2/2) [87822:88598](-) [86354:87109](-) ndhB_copy2 (2/2) [128664:129440](+) [130153:130908](+) petB (2/2) [71407:71412](+) [72166:72807](+) petD (2/2) [72994:73001](+) [73751:74225](+) rpl16 (2/2) [79290:79298](-) [77822:78223](-) rpl2 (2/2) [82383:82785](-) [81289:81719](-) rpl2_copy2 (2/2) [134477:134879](+) [135543:135973](+) rpoC1 (1/2) [22896:24944](+) rps12 (3/3) [67559:67672](-) [89991:90222](-) [89422:89450](-) rps12_copy2 (3/3) [67559:67672](-) [127040:127271](+) [127812:127840](+) rps16 (2/2) [5576:5636](-) [4568:4785](-) ycf3 (3/3) [43962:44087](-) [42975:43202](-) [42093:42251](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon accD ATA rpl2 ATA rpl2_copy2 ATA 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 129 genes (111 unique genes). Including: 84 protein-coding genes (77 are unique) 38 tRNA genes (30 are unique) 7 rRNA genes (4 are unique) Details are as follows: 84 protein-coding genes (77 are unique) Genes Length Location accD 147 [57140:57286](+) atpA 1515 [34377:35891](+) atpB 1497 [52201:53697](-) atpE 414 [51791:52204](-) atpF 552 [32901:33045](+) [33879:34285](+) atpH 246 [32200:32445](+) atpI 744 [30889:31632](+) ccsA 969 [106462:107430](+) cemA 693 [59015:59707](+) clpP 651 [67814:68464](-) infA 342 [76366:76707](-) matK 1536 [1747:3282](-) ndhA 1089 [113466:114014](-) [111894:112433](-) ndhB 1533 [87822:88598](-) [86354:87109](-) ndhB_copy2 1533 [128664:129440](+) [130153:130908](+) ndhC 363 [49638:50000](-) ndhD 1503 [107597:109099](-) ndhE 303 [109951:110253](-) ndhF 2346 [102340:104685](-) ndhG 531 [110470:111000](-) ndhH 1182 [114016:115197](-) ndhI 543 [111250:111792](-) ndhJ 489 [48328:48816](-) ndhK 759 [48910:49668](-) petA 963 [59935:60897](+) petB 648 [71407:71412](+) [72166:72807](+) petD 483 [72994:73001](+) [73751:74225](+) petG 114 [63923:64036](+) petN 90 [17578:17667](-) psaA 2253 [39169:41421](-) psaB 2205 [36939:39143](-) psaC 246 [109225:109470](-) psaI 111 [57546:57656](+) psaJ 159 [64751:64909](+) psbA 1062 [160:1221](-) psbB 1527 [68975:70501](+) psbC 1422 [9709:11130](+) psbD 1062 [8700:9761](+) psbE 252 [62235:62486](-) psbF 120 [62105:62224](-) psbH 222 [71056:71277](+) psbI 111 [7406:7516](+) psbJ 144 [61718:61861](-) psbK 186 [6808:6993](+) psbL 117 [61966:62082](-) psbM 105 [16757:16861](+) psbN 132 [70821:70952](-) psbT 117 [70656:70772](+) psbZ 189 [11720:11908](+) rbcL 1440 [54480:55919](+) rpl14 372 [77342:77713](-) rpl16 411 [79290:79298](-) [77822:78223](-) rpl2 834 [82383:82785](-) [81289:81719](-) rpl20 360 [66501:66860](-) rpl22 450 [80218:80667](-) rpl23 282 [82792:83073](-) rpl23_copy2 282 [134189:134470](+) rpl2_copy2 834 [134477:134879](+) [135543:135973](+) rpl32 180 [105407:105586](+) rpl33 201 [65358:65558](+) rpl36 114 [76141:76254](-) rpoA 1020 [74443:75462](-) rpoB 3231 [19628:22858](+) rpoC1 2049 [22896:24944](+) rpoC2 4434 [25154:29587](+) rps11 432 [75534:75965](-) rps12 375 [67559:67672](-) [89991:90222](-) [89422:89450](-) rps12_copy2 375 [67559:67672](-) [127040:127271](+) [127812:127840](+) rps14 312 [36481:36792](-) rps15 273 [101646:101918](+) rps15_copy2 273 [115344:115616](-) rps16 279 [5576:5636](-) [4568:4785](-) rps18 513 [65826:66338](+) rps19 216 [80746:80961](-) rps2 738 [29887:30624](+) rps3 720 [79440:80159](-) rps4 606 [45086:45691](-) rps7 471 [88898:89368](-) rps7_copy2 471 [127894:128364](+) rps8 411 [76787:77197](-) ycf2 570 [83643:84212](+) ycf2_copy2 570 [133050:133619](-) ycf3 513 [43962:44087](-) [42975:43202](-) [42093:42251](-) ycf4 558 [57988:58545](+) 38 tRNA genes (30 are unique) Genes Location trnK-UUU [3965:4001](-) [1451:1485](-) trnQ-UUG [6388:6459](-) trnS-GCU [7631:7718](-) trnS-UGA [11276:11363](-) trnG-GCC [12188:12258](+) trnfM-CAU [12707:12780](-) trnG-UCC [13600:13622](-) [12872:12919](-) trnT-GGU [14744:14815](+) trnE-UUC [15332:15404](+) trnY-GUA [15466:15547](+) trnD-GUC [15906:15979](+) trnC-GCA [18392:18462](-) trnR-UCU [36017:36088](-) trnS-GGA [44698:44784](+) trnT-UGU [46000:46072](-) trnL-UAA [46696:46730](+) [47299:47348](+) trnF-GAA [47669:47741](+) trnV-UAC [51360:51398](-) [50727:50761](-) trnM-CAU [51604:51676](+) trnW-CCA [64154:64227](-) trnP-UGG [64367:64440](-) trnH-GUG [81160:81233](+) trnI-CAU [83248:83321](-) trnL-CAA [85701:85781](-) trnV-GAC [91948:92019](+) trnI-GAU [94048:94084](+) [94891:94925](+) trnA-UGC [94991:95028](+) [95840:95874](+) trnR-ACG [99680:99753](+) trnN-GUU [100027:100098](-) trnL-UAG [106311:106390](+) trnN-GUU_copy2 [117164:117235](+) trnR-ACG_copy2 [117509:117582](-) trnA-UGC_copy2 [122234:122271](-) [121388:121422](-) trnI-GAU_copy2 [123178:123214](-) [122337:122371](-) trnV-GAC_copy2 [125243:125314](-) trnL-CAA_copy2 [131481:131561](+) trnI-CAU_copy2 [133941:134014](+) trnH-GUG_copy2 [136029:136102](-) 7 rRNA genes (4 are unique) Genes Location rrn16 [92250:93740](+) rrn23 [96026:97618](+) rrn4.5 [99009:99103](+) rrn5 [99331:99451](+) rrn5_copy2 [117811:117931](-) rrn4.5_copy2 [118159:118253](-) rrn16_copy2 [123522:125012](-) This genome has 21 genes with intron(s). Details are as follows: 18 gene(s) have 1 intron(s) Genes Exons rps16 [5576:5636](-) [4568:4785](-) atpF [32901:33045](+) [33879:34285](+) petB [71407:71412](+) [72166:72807](+) petD [72994:73001](+) [73751:74225](+) rpl16 [79290:79298](-) [77822:78223](-) rpl2 [82383:82785](-) [81289:81719](-) ndhB [87822:88598](-) [86354:87109](-) ndhA [113466:114014](-) [111894:112433](-) ndhB_copy2 [128664:129440](+) [130153:130908](+) rpl2_copy2 [134477:134879](+) [135543:135973](+) trnK-UUU [3965:4001](-) [1451:1485](-) trnG-UCC [13600:13622](-) [12872:12919](-) trnL-UAA [46696:46730](+) [47299:47348](+) trnV-UAC [51360:51398](-) [50727:50761](-) trnI-GAU [94048:94084](+) [94891:94925](+) trnA-UGC [94991:95028](+) [95840:95874](+) trnA-UGC_copy2 [122234:122271](-) [121388:121422](-) trnI-GAU_copy2 [123178:123214](-) [122337:122371](-) 3 gene(s) have 2 intron(s) Genes Exons rps12 [67559:67672](-) [89991:90222](-) [89422:89450](-) ycf3 [43962:44087](-) [42975:43202](-) [42093:42251](-) rps12_copy2 [67559:67672](-) [127040:127271](+) [127812:127840](+)