1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf2, ycf2_copy2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome None Small subunit of ribosome rps16 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames None Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [12676:12829](-) [11295:11701](-) clpP (3/3) [71146:71216](-) [70114:70404](-) [69245:69494](-) ndhA (2/2) [116140:116692](+) [117765:118303](+) ndhB (2/2) [95578:96352](-) [94115:94872](-) ndhB_copy2 (2/2) [140360:141134](+) [141840:142597](+) petB (2/2) [74161:74166](+) [74960:75601](+) petD (2/2) [75797:75802](+) [76531:77052](+) rpl16 (2/2) [81922:81930](-) [80501:80902](-) rpl2 (2/2) [84823:85213](-) [83734:84161](-) rpl2_copy2 (2/2) [151499:151889](+) [152551:152978](+) rpoC1 (2/2) [22740:23171](-) [20379:22007](-) rps12 (3/3) [68993:69106](-) [97761:97988](-) [97196:97222](-) rps12_copy2 (3/3) [68993:69106](-) [138724:138951](+) [139490:139516](+) ycf3 (3/3) [44312:44440](-) [43372:43599](-) [42471:42632](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon petB ATT rpl2 ATA ndhD ATC rpl2_copy2 ATA 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 123 genes (107 unique genes). Including: 85 protein-coding genes (79 are unique) 30 tRNA genes (24 are unique) 8 rRNA genes (4 are unique) Details are as follows: 85 protein-coding genes (79 are unique) Genes Length Location accD 1479 [56861:58339](+) atpA 1524 [9699:11222](-) atpB 1491 [52539:54029](-) atpE 405 [52138:52542](-) atpF 561 [12676:12829](-) [11295:11701](-) atpH 246 [13086:13331](-) atpI 744 [14122:14865](-) ccsA 966 [122670:123635](-) cemA 690 [60688:61377](+) clpP 612 [71146:71216](-) [70114:70404](-) [69245:69494](-) infA 234 [79061:79294](-) matK 1560 [1662:3221](-) ndhA 1092 [116140:116692](+) [117765:118303](+) ndhB 1533 [95578:96352](-) [94115:94872](-) ndhB_copy2 1533 [140360:141134](+) [141840:142597](+) ndhC 363 [49851:50213](-) ndhD 1506 [120941:122446](+) ndhE 306 [119921:120226](+) ndhF 2238 [125536:127773](+) ndhG 531 [119232:119762](+) ndhH 1188 [114951:116138](+) ndhI 543 [118390:118932](+) ndhJ 477 [48491:48967](-) ndhK 855 [49117:49971](-) petA 963 [61623:62585](+) petB 648 [74161:74166](+) [74960:75601](+) petD 528 [75797:75802](+) [76531:77052](+) petG 114 [65527:65640](+) petL 96 [65262:65357](+) petN 90 [28678:28767](+) psaA 2253 [39612:41864](-) psaB 2205 [37383:39587](-) psaC 246 [120577:120822](+) psaI 111 [58941:59051](+) psaJ 135 [66448:66582](+) psbA 1062 [82:1143](-) psbB 1527 [71677:73203](+) psbC 1464 [34028:35491](+) psbD 1062 [33061:34122](+) psbE 252 [63996:64247](-) psbF 120 [63866:63985](-) psbH 222 [73828:74049](+) psbI 111 [7175:7285](+) psbJ 123 [63482:63604](-) psbK 192 [6576:6767](+) psbL 117 [63727:63843](-) psbM 105 [29577:29681](-) psbN 132 [73572:73703](-) psbT 108 [73401:73508](+) psbZ 189 [36075:36263](+) rbcL 1455 [54752:56206](+) rpl14 369 [79968:80336](-) rpl16 411 [81922:81930](-) [80501:80902](-) rpl2 819 [84823:85213](-) [83734:84161](-) rpl20 369 [67895:68263](-) rpl22 387 [82795:83181](-) rpl23 282 [85238:85519](-) rpl23_copy2 282 [151193:151474](+) rpl2_copy2 819 [151499:151889](+) [152551:152978](+) rpl32 174 [124647:124820](-) rpl33 201 [67026:67226](+) rpl36 114 [78830:78943](-) rpoA 1014 [77205:78218](-) rpoB 3213 [23198:26410](-) rpoC1 2061 [22740:23171](-) [20379:22007](-) rpoC2 4113 [16101:20213](-) rps11 417 [78287:78703](-) rps12 369 [68993:69106](-) [97761:97988](-) [97196:97222](-) rps12_copy2 369 [68993:69106](-) [138724:138951](+) [139490:139516](+) rps14 303 [36962:37264](-) rps15 273 [114580:114852](+) rps18 306 [67393:67698](+) rps19 210 [83240:83449](-) rps2 723 [15114:15836](-) rps3 651 [82089:82739](-) rps4 606 [45095:45700](-) rps7 468 [96670:97137](-) rps7_copy2 468 [139575:140042](+) rps8 399 [79405:79803](-) ycf1 5565 [108622:114186](+) ycf15 60 [92719:92778](+) ycf2 6777 [85827:92603](+) ycf2_copy2 6777 [144109:150885](-) ycf3 519 [44312:44440](-) [43372:43599](-) [42471:42632](-) ycf4 561 [59350:59910](+) 30 tRNA genes (24 are unique) Genes Location trnQ-TTG [6157:6228](-) trnS-GCT [7432:7519](-) trnR-TCT [9506:9577](+) trnC-GCA [27668:27738](+) trnD-GTC [30599:30672](-) trnY-GTA [31044:31127](-) trnE-TTC [31192:31264](-) trnT-GGT [32015:32086](+) trnS-TGA [35627:35719](-) trnG-GCC [36544:36614](+) trnfM-CAU [36732:36805](-) trnS-GGA [44709:44795](+) trnT-TGT [46076:46148](-) trnF-GAA [47733:47805](+) trnM-CAT [51906:51978](+) trnW-CCA [65760:65833](-) trnP-TGG [65997:66070](-) trnH-GTG [83649:83722](+) trnI-CAT [85685:85758](-) trnL-CAA [93497:93577](-) trnV-GAC [99765:99836](+) trnR-ACG [107559:107632](+) trnN-GTT [108228:108299](-) trnL-TAG [123713:123792](-) trnN-GTT_copy2 [128413:128484](+) trnR-ACG_copy2 [129080:129153](-) trnV-GAC_copy2 [136876:136947](-) trnL-CAA_copy2 [143135:143215](+) trnI-CAT_copy2 [150954:151027](+) trnH-GTG_copy2 [152990:153063](-) 8 rRNA genes (4 are unique) Genes Location rrn16S [100064:101554](-) rrn23S [103349:106753](-) rrn4.5S [106853:106955](-) rrn5S [107183:107303](+) rrn5S_copy2 [129409:129529](-) rrn4.5S_copy2 [129757:129859](+) rrn23S_copy2 [129959:133363](+) rrn16S_copy2 [135158:136648](+) This genome has 14 genes with intron(s). Details are as follows: 10 gene(s) have 1 intron(s) Genes Exons atpF [12676:12829](-) [11295:11701](-) rpoC1 [22740:23171](-) [20379:22007](-) petB [74161:74166](+) [74960:75601](+) petD [75797:75802](+) [76531:77052](+) rpl16 [81922:81930](-) [80501:80902](-) rpl2 [84823:85213](-) [83734:84161](-) ndhB [95578:96352](-) [94115:94872](-) ndhA [116140:116692](+) [117765:118303](+) ndhB_copy2 [140360:141134](+) [141840:142597](+) rpl2_copy2 [151499:151889](+) [152551:152978](+) 4 gene(s) have 2 intron(s) Genes Exons rps12 [68993:69106](-) [97761:97988](-) [97196:97222](-) ycf3 [44312:44440](-) [43372:43599](-) [42471:42632](-) rps12_copy2 [68993:69106](-) [138724:138951](+) [139490:139516](+) clpP [71146:71216](-) [70114:70404](-) [69245:69494](-)