1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor None Conserved open reading frames ycf1, ycf15, ycf15_copy2, ycf1_copy2, ycf2, ycf2_copy2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome None Small subunit of ribosome rps7 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames None Other genes None 2. Multicopy genes with different lengths: Genes Length Location ycf1 930 [108980:109910](+) ycf1_copy2 3048 [125169:128217](-) 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [12206:12350](-) [11074:11483](-) clpP (3/3) [71588:71658](-) [70460:70753](-) [69667:69892](-) ndhA (2/2) [120413:120965](-) [118768:119306](-) ndhB (2/2) [95789:96563](-) [94345:95102](-) ndhB_copy2 (2/2) [140635:141409](+) [142096:142853](+) petB (2/2) [74594:74599](+) [75356:75997](+) petD (2/2) [76196:76203](+) [76908:77382](+) rpl16 (2/2) [82305:82313](-) [80947:81345](-) rpl2 (2/2) [85104:85494](-) [83985:84418](-) rpl2_copy2 (2/2) [151704:152094](+) [152780:153213](+) rpoC1 (2/2) [22600:23031](-) [20203:21813](-) rps12 (3/3) [69393:69506](+) [138988:139219](+) [139764:139789](+) rps12_copy2 (3/3) [69393:69506](+) [97979:98210](-) [97409:97434](-) rps16 (2/2) [5995:6034](-) [4889:5109](-) ycf3 (3/3) [44286:44403](-) [43317:43546](-) [42381:42533](-) ### The exon column shows the number of (actual exons/expected exons). ### Uncommon intron-contained genes: ycf15 2 [93141:93217](+) [93513:93666](+)] ycf15_copy2 2 [143981:144057](-) [143532:143685](-)] 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon None None 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 130 genes (110 unique genes). Including: 85 protein-coding genes (78 are unique) 37 tRNA genes (28 are unique) 8 rRNA genes (4 are unique) Details are as follows: 85 protein-coding genes (78 are unique) Genes Length Location accD 1341 [57140:58480](+) atpA 1521 [9491:11011](-) atpB 1497 [52693:54189](-) atpE 399 [52298:52696](-) atpF 555 [12206:12350](-) [11074:11483](-) atpH 246 [12803:13048](-) atpI 744 [13920:14663](-) ccsA 930 [113364:114293](+) cemA 702 [61091:61792](+) clpP 591 [71588:71658](-) [70460:70753](-) [69667:69892](-) matK 1512 [1894:3405](-) ndhA 1092 [120413:120965](-) [118768:119306](-) ndhB 1533 [95789:96563](-) [94345:95102](-) ndhB_copy2 1533 [140635:141409](+) [142096:142853](+) ndhC 363 [49969:50331](-) ndhD 1410 [114525:115934](-) ndhE 306 [116690:116995](-) ndhF 2208 [109896:112103](-) ndhG 531 [117225:117755](-) ndhH 1182 [120967:122148](-) ndhI 495 [118195:118689](-) ndhJ 477 [48659:49135](-) ndhK 669 [49247:49915](-) petA 963 [61995:62957](+) petB 648 [74594:74599](+) [75356:75997](+) petD 483 [76196:76203](+) [76908:77382](+) petG 114 [65753:65866](+) petL 96 [65433:65528](+) petN 90 [28166:28255](+) psaA 2253 [39468:41720](-) psaB 2205 [37238:39442](-) psaC 246 [116179:116424](-) psaI 114 [59201:59314](+) psaJ 135 [66695:66829](+) psbA 1062 [247:1308](-) psbB 1527 [72146:73672](+) psbC 1422 [33673:35094](+) psbD 1062 [32664:33725](+) psbE 252 [64447:64698](-) psbF 120 [64318:64437](-) psbH 222 [74260:74481](+) psbI 111 [7519:7629](+) psbJ 123 [63896:64018](-) psbK 186 [6906:7091](+) psbL 117 [64179:64295](-) psbM 105 [28885:28989](-) psbN 132 [74021:74152](-) psbT 108 [73859:73966](+) psbZ 189 [35733:35921](+) rbcL 1434 [54971:56404](+) rpl14 369 [80453:80821](-) rpl16 408 [82305:82313](-) [80947:81345](-) rpl2 825 [85104:85494](-) [83985:84418](-) rpl20 372 [68219:68590](-) rpl22 483 [83095:83577](-) rpl23 282 [85513:85794](-) rpl23_copy2 282 [151404:151685](+) rpl2_copy2 825 [151704:152094](+) [152780:153213](+) rpl32 174 [112433:112606](+) rpl33 201 [67253:67453](+) rpl36 114 [79227:79340](-) rpoA 984 [77637:78620](-) rpoB 3213 [23064:26276](-) rpoC1 2043 [22600:23031](-) [20203:21813](-) rpoC2 4155 [15862:20016](-) rps11 417 [78692:79108](-) rps12 372 [69393:69506](+) [138988:139219](+) [139764:139789](+) rps12_copy2 372 [69393:69506](+) [97979:98210](-) [97409:97434](-) rps14 303 [36806:37108](-) rps15 258 [122245:122502](-) rps16 261 [5995:6034](-) [4889:5109](-) rps18 282 [67656:67937](+) rps19 150 [83634:83783](-) rps2 711 [14907:15617](-) rps3 657 [82454:83110](-) rps4 606 [44991:45596](-) rps8 405 [79865:80269](-) ycf1 930 [108981:109910](+) ycf15 231 [93141:93217](+) [93513:93666](+) ycf15_copy2 231 [143981:144057](-) [143532:143685](-) ycf1_copy2 3048 [125170:128217](-) ycf2 4953 [86208:91160](+) ycf2_copy2 4953 [146038:150990](-) ycf3 501 [44286:44403](-) [43317:43546](-) [42381:42533](-) ycf4 555 [59748:60302](+) 37 tRNA genes (28 are unique) Genes Location trnH-GUG [35:108](-) trnK-UUU [4166:4202](-) [1582:1616](-) trnQ-UUG [6472:6543](-) trnS-GCU [7707:7794](-) trnS-CGA [8236:8266](+) [8957:9016](+) trnR-UCU [9222:9293](+) trnC-GCA [27367:27437](+) trnD-GUC [29878:29951](-) trnY-GUA [30429:30512](-) trnE-UUC [30572:30644](-) trnT-GGU [31134:31205](+) trnS-UGA [35281:35372](-) trnG-GCC [36338:36408](+) trnM-CAU [36556:36629](-) trnS-GGA [44600:44686](+) trnT-UGU [45969:46041](-) trnL-UAA [47067:47101](+) [47609:47658](+) trnF-GAA [47980:48052](+) trnV-UAC [51771:51809](-) [51131:51167](-) trnM-CAU_copy2 [51984:52056](+) trnW-CCA [65995:66068](-) trnP-UGG [66240:66313](-) trnM-CAU_copy3 [85960:86033](-) trnL-CAA [93681:93761](-) trnV-GAC [100090:100161](+) trnI [102180:102211](+) [103162:103201](+) trnA-UGC [103265:103301](+) [104101:104136](+) trnR-ACG [107880:107953](+) trnN-GUU [108586:108657](-) trnL-UAG [113109:113188](+) trnN-GUU_copy2 [128541:128612](+) trnR-ACG_copy2 [129245:129318](-) trnA-UGC_copy2 [133897:133933](-) [133062:133097](-) trnI_copy2 [134987:135018](-) [133997:134036](-) trnV-GAC_copy2 [137037:137108](-) trnL-CAA_copy2 [143437:143517](+) trnM-CAU_copy4 [151165:151238](+) 8 rRNA genes (4 are unique) Genes Location rrn16S [100390:101880](+) rrn23S [104289:107099](+) rrn4.5S [107198:107300](+) rrn5S [107514:107634](+) rrn5S_copy2 [129564:129684](-) rrn4.5S_copy2 [129898:130000](-) rrn23S_copy2 [130099:132909](-) rrn16S_copy2 [135318:136808](-) This genome has 25 genes with intron(s). Details are as follows: 21 gene(s) have 1 intron(s) Genes Exons rps16 [5995:6034](-) [4889:5109](-) atpF [12206:12350](-) [11074:11483](-) rpoC1 [22600:23031](-) [20203:21813](-) petB [74594:74599](+) [75356:75997](+) petD [76196:76203](+) [76908:77382](+) rpl16 [82305:82313](-) [80947:81345](-) rpl2 [85104:85494](-) [83985:84418](-) ycf15 [93141:93217](+) [93513:93666](+) ndhB [95789:96563](-) [94345:95102](-) ndhA [120413:120965](-) [118768:119306](-) ndhB_copy2 [140635:141409](+) [142096:142853](+) ycf15_copy2 [143981:144057](-) [143532:143685](-) rpl2_copy2 [151704:152094](+) [152780:153213](+) trnK-UUU [4166:4202](-) [1582:1616](-) trnS-CGA [8236:8266](+) [8957:9016](+) trnL-UAA [47067:47101](+) [47609:47658](+) trnV-UAC [51771:51809](-) [51131:51167](-) trnI [102180:102211](+) [103162:103201](+) trnA-UGC [103265:103301](+) [104101:104136](+) trnA-UGC_copy2 [133897:133933](-) [133062:133097](-) trnI_copy2 [134987:135018](-) [133997:134036](-) 4 gene(s) have 2 intron(s) Genes Exons ycf3 [44286:44403](-) [43317:43546](-) [42381:42533](-) rps12 [69393:69506](+) [138988:139219](+) [139764:139789](+) rps12_copy2 [69393:69506](+) [97979:98210](-) [97409:97434](-) clpP [71588:71658](-) [70460:70753](-) [69667:69892](-)