1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbJ, psbK, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf15_copy2, ycf2, ycf2_copy2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpH Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex petB Subunits of photosystem I None Subunits of photosystem II psbI, psbL Large subunit of ribosome None Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames None Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [13134:13292](-) [12001:12480](-) clpP (3/3) [76059:76127](-) [74860:75150](-) [73988:74215](-) ndhA (2/2) [126508:127074](-) [124846:125385](-) ndhB (2/2) [100663:101439](-) [99224:99979](-) ndhB_copy2 (2/2) [146953:147729](+) [148413:149168](+) petD (1/2) [81277:81801](+) rpl16 (1/2) [85273:85632](-) rpl2 (2/2) [89652:90044](-) [88553:88687](-) rpl2_copy2 (2/2) [158348:158740](+) [159705:159839](+) rpoC1 (2/2) [23437:23868](-) [21040:22659](-) rps12 (3/3) [73762:73875](-) [145326:145557](+) [146094:146119](+) rps16 (2/2) [5755:5794](-) [4581:4810](-) ycf3 (3/3) [46700:46825](-) [45742:45969](-) [44866:45018](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps19 GTG ndhD ATA 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 123 genes (106 unique genes). Including: 82 protein-coding genes (76 are unique) 33 tRNA genes (26 are unique) 8 rRNA genes (4 are unique) Details are as follows: 82 protein-coding genes (76 are unique) Genes Length Location accD 1527 [60448:61974](+) atpA 1524 [10413:11936](-) atpB 1497 [56149:57645](-) atpE 402 [55751:56152](-) atpF 639 [13134:13292](-) [12001:12480](-) atpI 744 [14810:15553](-) ccsA 984 [119427:120410](+) cemA 690 [64640:65329](+) clpP 588 [76059:76127](-) [74860:75150](-) [73988:74215](-) infA 240 [83856:84095](-) matK 1509 [1622:3130](-) ndhA 1107 [126508:127074](-) [124846:125385](-) ndhB 1533 [100663:101439](-) [99224:99979](-) ndhB_copy2 1533 [146953:147729](+) [148413:149168](+) ndhC 363 [53071:53433](-) ndhD 1563 [120679:122241](-) ndhE 306 [122801:123106](-) ndhF 2244 [114861:117104](-) ndhG 534 [123334:123867](-) ndhH 1182 [127076:128257](-) ndhI 504 [124268:124771](-) ndhJ 477 [51763:52239](-) ndhK 852 [52340:53191](-) petA 963 [65556:66518](+) petD 525 [81277:81801](+) petG 114 [70001:70114](+) petL 96 [69727:69822](+) petN 90 [29249:29338](+) psaA 2253 [41888:44140](-) psaB 2205 [39658:41862](-) psaC 246 [122309:122554](-) psaI 102 [62716:62817](+) psaJ 132 [71037:71168](+) psbA 1062 [2:1063](-) psbB 1527 [76576:78102](+) psbC 1422 [35791:37212](+) psbD 1062 [34782:35843](+) psbE 252 [68169:68420](-) psbF 120 [68040:68159](-) psbH 240 [78682:78921](+) psbJ 123 [67620:67742](-) psbK 186 [7157:7342](+) psbM 105 [30546:30650](-) psbN 132 [78466:78597](-) psbT 108 [78294:78401](+) psbZ 189 [37928:38116](+) rbcL 1428 [58426:59853](+) rpl14 369 [84773:85141](-) rpl16 360 [85273:85632](-) rpl2 528 [89652:90044](-) [88553:88687](-) rpl20 387 [72592:72978](-) rpl22 591 [87572:88162](-) rpl23 282 [90063:90344](-) rpl23_copy2 282 [158048:158329](+) rpl2_copy2 528 [158348:158740](+) [159705:159839](+) rpl32 174 [117881:118054](+) rpl33 201 [71656:71856](+) rpl36 114 [83618:83731](-) rpoA 996 [82015:83010](-) rpoB 3213 [23900:27112](-) rpoC1 2052 [23437:23868](-) [21040:22659](-) rpoC2 4185 [16690:20874](-) rps11 417 [83091:83507](-) rps12 372 [73762:73875](-) [145326:145557](+) [146094:146119](+) rps14 303 [39216:39518](-) rps15 267 [128352:128618](-) rps16 270 [5755:5794](-) [4581:4810](-) rps18 306 [72021:72326](+) rps19 279 [88210:88488](-) rps2 711 [15764:16474](-) rps3 657 [86931:87587](-) rps4 606 [48110:48715](-) rps7 468 [101752:102219](-) rps7_copy2 468 [146173:146640](+) rps8 405 [84216:84620](-) ycf1 5529 [129078:134606](-) ycf15 234 [97672:97905](+) ycf15_copy2 234 [150487:150720](-) ycf2 6858 [90672:97529](+) ycf2_copy2 6858 [150863:157720](-) ycf3 507 [46700:46825](-) [45742:45969](-) [44866:45018](-) ycf4 567 [63239:63805](+) 33 tRNA genes (26 are unique) Genes Location trnK-UUU [3850:3886](-) [1311:1339](-) trnQ-UUG [6726:6797](-) trnS-GCU [8018:8105](-) trnR-UCU [10090:10161](+) trnC-GCA [28300:28371](+) trnD-GUC [31845:31918](-) trnY-GUA [32385:32468](-) trnE-UUC [32523:32595](-) trnS-UGA [37475:37567](-) trnfM-CAU [38965:39038](-) trnS-GGA [47744:47830](+) trnT-UGU [49015:49087](-) trnL-UAA [49997:50033](+) [50553:50602](+) trnF-GAA [50981:51053](+) trnV-UAC [55236:55274](-) [54622:54658](-) trnM-CAU [55452:55524](+) trnW-CCA [70240:70313](-) trnP-UGG [70495:70567](-) trnI-CAU [90510:90583](-) trnL-CAA [98547:98627](-) trnV-GAC [104902:104973](+) trnI-GAU [106984:107025](+) [107969:108003](+) trnA-UGC [108068:108105](+) [108914:108948](+) trnR-ACG [112724:112797](+) trnN-GUU [113398:113469](-) trnL-UAG [119225:119304](+) trnN-GUU_copy2 [134923:134994](+) trnR-ACG_copy2 [135595:135668](-) trnA-UGC_copy2 [140287:140324](-) [139444:139478](-) trnI-GAU_copy2 [141367:141408](-) [140389:140423](-) trnV-GAC_copy2 [143419:143490](-) trnL-CAA_copy2 [149765:149845](+) trnI-CAU_copy2 [157809:157882](+) 8 rRNA genes (4 are unique) Genes Location rrn16 [105193:106683](+) rrn23 [109127:111933](+) rrn4.5 [112032:112134](+) rrn5 [112350:112470](+) rrn5_copy2 [135922:136042](-) rrn4.5_copy2 [136258:136360](-) rrn23_copy2 [136459:139265](-) rrn16_copy2 [141709:143199](-) This genome has 18 genes with intron(s). Details are as follows: 15 gene(s) have 1 intron(s) Genes Exons rps16 [5755:5794](-) [4581:4810](-) atpF [13134:13292](-) [12001:12480](-) rpoC1 [23437:23868](-) [21040:22659](-) rpl2 [89652:90044](-) [88553:88687](-) ndhB [100663:101439](-) [99224:99979](-) ndhA [126508:127074](-) [124846:125385](-) ndhB_copy2 [146953:147729](+) [148413:149168](+) rpl2_copy2 [158348:158740](+) [159705:159839](+) trnK-UUU [3850:3886](-) [1311:1339](-) trnL-UAA [49997:50033](+) [50553:50602](+) trnV-UAC [55236:55274](-) [54622:54658](-) trnI-GAU [106984:107025](+) [107969:108003](+) trnA-UGC [108068:108105](+) [108914:108948](+) trnA-UGC_copy2 [140287:140324](-) [139444:139478](-) trnI-GAU_copy2 [141367:141408](-) [140389:140423](-) 3 gene(s) have 2 intron(s) Genes Exons ycf3 [46700:46825](-) [45742:45969](-) [44866:45018](-) rps12 [73762:73875](-) [145326:145557](+) [146094:146119](+) clpP [76059:76127](-) [74860:75150](-) [73988:74215](-)