1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbT, psbZ Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease None Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf15_copy2, ycf2, ycf2_copy2 Other genes clpP1, pafI, pafII, pbf1 Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II psbN, ycf3 Large subunit of ribosome None Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease clpP Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf4 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [55835:55979](-) [54726:55135](-) ndhA (2/2) [118643:119195](-) [117036:117574](-) ndhB (2/2) [93860:94636](-) [92434:93189](-) ndhB_copy2 (2/2) [138258:139034](+) [139705:140460](+) petB (2/2) [9213:9218](-) [7818:8459](-) petD (2/2) [7631:7638](-) [6482:6956](-) rpl16 (2/2) [1610:1618](+) [2627:3025](+) rpl2 (2/2) [83954:84344](-) [82855:83288](-) rpl2_copy2 (2/2) [148550:148940](+) [149606:150039](+) rpoC1 (2/2) [66268:66699](-) [63891:65528](-) rps12 (3/3) [14306:14419](+) [136649:136880](+) [137416:137441](+) rps16 (2/2) [76337:76376](+) [77266:77462](+) ### The exon column shows the number of (actual exons/expected exons). ### Uncommon intron-contained genes: rps19 2 [150094:150154](+) [1:218](+)] clpP1 3 [12143:12213](+) [13026:13317](+) [13930:14157](+)] pafI 3 [38895:39018](+) [39725:39954](+) [40695:40847](+)] 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps19 GTG psbC GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 131 genes (114 unique genes). Including: 86 protein-coding genes (80 are unique) 37 tRNA genes (30 are unique) 8 rRNA genes (4 are unique) Details are as follows: 86 protein-coding genes (80 are unique) Genes Length Location accD 1452 [24477:25928](-) atpA 1527 [53130:54656](-) atpB 1479 [28674:30152](+) atpE 402 [30149:30550](+) atpF 555 [55835:55979](-) [54726:55135](-) atpH 246 [56339:56584](-) atpI 744 [57719:58462](-) ccsA 969 [111762:112730](+) cemA 690 [22009:22698](-) clpP1 591 [12143:12213](+) [13026:13317](+) [13930:14157](+) infA 234 [4224:4457](+) matK 1512 [79108:80619](+) ndhA 1092 [118643:119195](-) [117036:117574](-) ndhB 1533 [93860:94636](-) [92434:93189](-) ndhB_copy2 1533 [138258:139034](+) [139705:140460](+) ndhC 363 [32787:33149](+) ndhD 1383 [112941:114323](-) ndhE 306 [115039:115344](-) ndhF 2226 [107274:109499](-) ndhG 531 [115546:116076](-) ndhH 1182 [119197:120378](-) ndhI 501 [116459:116959](-) ndhJ 477 [33983:34459](+) ndhK 741 [33140:33880](+) pafI 507 [38895:39018](+) [39725:39954](+) [40695:40847](+) pafII 555 [22949:23503](-) pbf1 132 [9667:9798](+) petA 963 [20808:21770](-) petB 648 [9213:9218](-) [7818:8459](-) petD 483 [7631:7638](-) [6482:6956](-) petG 114 [17777:17890](-) petL 96 [18056:18151](-) petN 90 [72620:72709](-) psaA 2253 [41527:43779](+) psaB 2205 [43805:46009](+) psaC 246 [114560:114805](-) psaI 111 [23877:23987](-) psaJ 135 [16892:17026](-) psbA 1062 [81219:82280](+) psbB 1527 [10165:11691](-) psbC 1386 [48052:49437](-) psbD 1062 [49421:50482](-) psbE 252 [19256:19507](+) psbF 120 [19517:19636](+) psbH 222 [9343:9564](-) psbI 111 [74324:74434](-) psbJ 123 [19924:20046](+) psbK 180 [74828:75007](-) psbL 117 [19659:19775](+) psbM 105 [71998:72102](+) psbT 102 [9873:9974](-) psbZ 189 [47232:47420](-) rbcL 1458 [26464:27921](-) rpl14 369 [3149:3517](+) rpl16 408 [1610:1618](+) [2627:3025](+) rpl2 825 [83954:84344](-) [82855:83288](-) rpl20 381 [15146:15526](+) rpl22 468 [342:809](+) rpl23 282 [84363:84644](-) rpl23_copy2 282 [148250:148531](+) rpl2_copy2 825 [148550:148940](+) [149606:150039](+) rpl32 165 [110552:110716](+) rpl33 201 [16268:16468](-) rpl36 114 [4564:4677](+) rpoA 1008 [5264:6271](+) rpoB 3183 [66726:69908](-) rpoC1 2070 [66268:66699](-) [63891:65528](-) rpoC2 4134 [59638:63771](-) rps11 411 [4769:5179](+) rps12 372 [14306:14419](+) [136649:136880](+) [137416:137441](+) rps14 303 [46143:46445](+) rps15 279 [120470:120748](-) rps16 237 [76337:76376](+) [77266:77462](+) rps18 306 [15787:16092](-) rps19 279 [150094:150154](+) [1:218](+) rps2 711 [58678:59388](-) rps3 657 [794:1450](+) rps4 606 [37027:37632](+) rps7 468 [94932:95399](-) rps7_copy2 468 [137495:137962](+) rps8 405 [3701:4105](+) ycf1 5070 [121150:126219](-) ycf15 192 [97196:97387](-) ycf15_copy2 192 [135507:135698](+) ycf2 6390 [84995:91384](+) ycf2_copy2 6390 [141510:147899](-) 37 tRNA genes (30 are unique) Genes Location trnP-UGG [17335:17408](+) trnW-CCA [17586:17659](+) trnM-CAU [30765:30837](-) trnV-UAC [31013:31050](+) [31626:31660](+) trnF-GAA [35154:35226](-) trnL-UAA [36045:36079](-) [35587:35636](-) trnT-UGU [36597:36669](+) trnS-GGA [37955:38041](-) trnfM-CAU [46600:46673](+) trnG-GCC [46844:46914](-) trnS-UGA [47766:47848](+) trnT-GGU [51691:51762](-) trnG-UCC [51927:51949](+) [52678:52725](+) trnR-UCU [52934:53005](+) trnE-UUC [70782:70853](+) trnY-GUA [71052:71135](+) trnD-GUC [71258:71331](+) trnC-GCA [73296:73366](-) trnS-GCU [74103:74190](+) trnQ-UUG [75367:75438](+) trnK-UUU [78342:78378](+) [80963:80997](+) trnH-GUG [82658:82732](+) trnI-CAU [84810:84883](-) trnL-CAA [91791:91871](-) trnV-GAC [98072:98143](+) trnI-GAU [100154:100191](+) [100972:101006](+) trnA-UGC [101071:101108](+) [101921:101955](+) trnR-ACG [105729:105802](+) trnN-GUU [106276:106347](-) trnL-UAG [111584:111663](+) trnN-GUU_copy2 [126547:126618](+) trnR-ACG_copy2 [127092:127165](-) trnA-UGC_copy2 [131786:131823](-) [130939:130973](-) trnI-GAU_copy2 [132703:132740](-) [131888:131922](-) trnV-GAC_copy2 [134751:134822](-) trnL-CAA_copy2 [141023:141103](+) trnI-CAU_copy2 [148011:148084](+) 8 rRNA genes (4 are unique) Genes Location rrn16 [98370:99860](+) rrn23 [102108:104917](+) rrn4.5 [105016:105118](+) rrn5 [105364:105484](+) rrn5_copy2 [127410:127530](-) rrn4.5_copy2 [127776:127878](-) rrn23_copy2 [127977:130786](-) rrn16_copy2 [133034:134524](-) This genome has 23 genes with intron(s). Details are as follows: 20 gene(s) have 1 intron(s) Genes Exons rps19 [150094:150154](+) [1:218](+) rpl16 [1610:1618](+) [2627:3025](+) petD [7631:7638](-) [6482:6956](-) petB [9213:9218](-) [7818:8459](-) atpF [55835:55979](-) [54726:55135](-) rpoC1 [66268:66699](-) [63891:65528](-) rps16 [76337:76376](+) [77266:77462](+) rpl2 [83954:84344](-) [82855:83288](-) ndhB [93860:94636](-) [92434:93189](-) ndhA [118643:119195](-) [117036:117574](-) ndhB_copy2 [138258:139034](+) [139705:140460](+) rpl2_copy2 [148550:148940](+) [149606:150039](+) trnV-UAC [31013:31050](+) [31626:31660](+) trnL-UAA [36045:36079](-) [35587:35636](-) trnG-UCC [51927:51949](+) [52678:52725](+) trnK-UUU [78342:78378](+) [80963:80997](+) trnI-GAU [100154:100191](+) [100972:101006](+) trnA-UGC [101071:101108](+) [101921:101955](+) trnA-UGC_copy2 [131786:131823](-) [130939:130973](-) trnI-GAU_copy2 [132703:132740](-) [131888:131922](-) 3 gene(s) have 2 intron(s) Genes Exons clpP1 [12143:12213](+) [13026:13317](+) [13930:14157](+) rps12 [14306:14419](+) [136649:136880](+) [137416:137441](+) pafI [38895:39018](+) [39725:39954](+) [40695:40847](+)