1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaA_copy2, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbK, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA, ccsA_copy2 Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf2, ycf2_copy2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhD Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II psbJ, psbL Large subunit of ribosome rpl32 Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf1, ycf15 Other genes None 2. Multicopy genes with different lengths: Genes Length Location psaA 2253 [38819:41072](-) psaA_copy2 51 [63260:63311](-) 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [12439:12583](-) [11321:11730](-) clpP (3/3) [71734:71802](-) [70673:70963](-) [69820:70065](-) ndhA (2/2) [117485:118037](-) [115876:116414](-) ndhB (2/2) [96545:97321](-) [95111:95866](-) ndhB_copy2 (2/2) [144186:144962](+) [145641:146396](+) petB (2/2) [74692:74697](+) [75465:76106](+) petD (2/2) [76278:76286](+) [77025:77501](+) rpl16 (2/2) [82578:82586](-) [81043:81441](-) rpl2 (2/2) [85371:85761](-) [84279:84712](-) rpoC1 (2/2) [22904:23373](-) [20525:22139](-) rps12 (3/3) [69535:69648](-) [98730:98961](-) [98165:98190](-) rps12_copy2 (3/3) [69535:69648](-) [142546:142777](+) [143317:143342](+) rps16 (2/2) [5748:5787](-) [4689:4918](-) ycf3 (3/3) [43494:43617](-) [42532:42761](-) [41631:41783](-) ### The exon column shows the number of (actual exons/expected exons). ### Uncommon intron-contained genes: accD 2 [56293:56766](+) [57658:58278](+)] rps18 2 [67698:67844](+) [68052:68114](+)] 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon None None 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 127 genes (105 unique genes). Including: 80 protein-coding genes (74 are unique) 39 tRNA genes (27 are unique) 8 rRNA genes (4 are unique) Details are as follows: 80 protein-coding genes (74 are unique) Genes Length Location accD 1095 [56293:56766](+) [57658:58278](+) atpA 1524 [9730:11253](-) atpB 1497 [51879:53375](-) atpE 402 [51481:51882](-) atpF 555 [12439:12583](-) [11321:11730](-) atpH 246 [12975:13220](-) atpI 744 [14336:15079](-) ccsA 972 [110695:111666](+) ccsA_copy2 972 [129841:130812](-) cemA 690 [60421:61110](+) clpP 606 [71734:71802](-) [70673:70963](-) [69820:70065](-) infA 240 [79534:79773](-) matK 1467 [1865:3331](-) ndhA 1092 [117485:118037](-) [115876:116414](-) ndhB 1533 [96545:97321](-) [95111:95866](-) ndhB_copy2 1533 [144186:144962](+) [145641:146396](+) ndhC 363 [49059:49421](-) ndhE 306 [113855:114160](-) ndhF 2256 [125860:128115](-) ndhG 531 [114393:114923](-) ndhH 1182 [118039:119220](-) ndhI 498 [115284:115781](-) ndhJ 477 [47757:48233](-) ndhK 666 [48345:49010](-) petA 963 [61341:62303](+) petB 648 [74692:74697](+) [75465:76106](+) petD 486 [76278:76286](+) [77025:77501](+) petG 114 [65651:65764](+) petL 96 [65381:65476](+) petN 90 [28184:28273](+) psaA 2253 [38820:41072](-) psaA_copy2 51 [63261:63311](-) psaB 2205 [36590:38794](-) psaC 246 [113333:113578](-) psaI 111 [58883:58993](+) psaJ 138 [66687:66824](+) psbA 1062 [281:1342](-) psbB 1527 [72225:73751](+) psbC 1422 [33167:34588](+) psbD 1062 [32158:33219](+) psbE 252 [63809:64060](-) psbF 120 [63679:63798](-) psbH 222 [74336:74557](+) psbI 111 [7590:7700](+) psbK 186 [7072:7257](+) psbM 111 [29359:29469](-) psbN 132 [74097:74228](-) psbT 108 [73930:74037](+) psbZ 189 [35250:35438](+) rbcL 1428 [54173:55600](+) rpl14 375 [80505:80879](-) rpl16 408 [82578:82586](-) [81043:81441](-) rpl2 825 [85371:85761](-) [84279:84712](-) rpl20 363 [68380:68742](-) rpl22 474 [83380:83853](-) rpl23 282 [85784:86065](-) rpl33 201 [67210:67410](+) rpl36 114 [79301:79414](-) rpoA 1002 [77699:78700](-) rpoB 3219 [23376:26594](-) rpoC1 2085 [22904:23373](-) [20525:22139](-) rpoC2 4155 [16212:20366](-) rps11 417 [78775:79191](-) rps12 372 [69535:69648](-) [98730:98961](-) [98165:98190](-) rps12_copy2 372 [69535:69648](-) [142546:142777](+) [143317:143342](+) rps14 303 [36157:36459](-) rps15 279 [119312:119590](-) rps16 270 [5748:5787](-) [4689:4918](-) rps18 210 [67698:67844](+) [68052:68114](+) rps19 225 [83943:84167](-) rps2 711 [15285:15995](-) rps3 657 [82739:83395](-) rps4 606 [44438:45043](-) rps7 468 [97644:98111](-) rps7_copy2 468 [143396:143863](+) rps8 420 [79885:80304](-) ycf2 7137 [86715:93851](+) ycf2_copy2 7137 [147656:154792](-) ycf3 507 [43494:43617](-) [42532:42761](-) [41631:41783](-) ycf4 555 [59437:59991](+) 39 tRNA genes (27 are unique) Genes Location trnH-GUG [16:89](-) trnK-UUU [4078:4114](-) [1540:1575](-) trnQ-UUG [6642:6713](-) trnS-GCU [7810:7897](-) trnG-GCC [8564:8584](+) [9286:9332](+) trnR-UCU [9516:9587](+) trnC-GCA [27641:27711](+) trnD-GUC [29982:30055](-) trnY-GUA [30167:30250](-) trnE-UUC [30310:30382](-) trnT-GGU [31309:31380](+) trnS-UGA [34813:34905](-) trnG-GCC_copy2 [35717:35787](+) trnM-CAU [35942:36015](-) trnS-GGA [44046:44132](+) trnT-UGU [45429:45501](-) trnL-UAA [46212:46246](+) [46743:46792](+) trnF-GAA [47132:47204](+) trnV [50959:50993](-) [50339:50364](-) trnM-CAU_copy2 [51191:51263](+) trnW-CCA [65894:65967](-) trnP-UGG [66157:66230](-) trnH-GUG_copy2 [86280:86353](+) trnM-CAU_copy3 [86498:86571](-) trnL-CAA [94448:94528](-) trnV-GAC [100881:100952](+) trnI [102967:102998](+) [103948:103987](+) trnA-UGC [104052:104088](+) [104895:104930](+) trnR-ACG [108676:108749](+) trnN-GUU [109215:109286](-) trnL-UAG [110522:110601](+) trnL-UAG_copy2 [130906:130985](-) trnN-GUU_copy2 [132221:132292](+) trnR-ACG_copy2 [132758:132831](-) trnA-UGC_copy2 [137419:137455](-) [136577:136612](-) trnI_copy2 [138509:138540](-) [137520:137559](-) trnV-GAC_copy2 [140555:140626](-) trnL-CAA_copy2 [146979:147059](+) trnM-CAU_copy4 [154936:155009](+) 8 rRNA genes (4 are unique) Genes Location rrn16S [101180:102669](+) rrn23S [105087:107898](+) rrn4.5S [107997:108099](+) rrn5S [108324:108444](+) rrn5S_copy2 [133063:133183](-) rrn4.5S_copy2 [133408:133510](-) rrn23S_copy2 [133609:136420](-) rrn16S_copy2 [138838:140327](-) This genome has 24 genes with intron(s). Details are as follows: 20 gene(s) have 1 intron(s) Genes Exons rps16 [5748:5787](-) [4689:4918](-) atpF [12439:12583](-) [11321:11730](-) rpoC1 [22904:23373](-) [20525:22139](-) accD [56293:56766](+) [57658:58278](+) rps18 [67698:67844](+) [68052:68114](+) petB [74692:74697](+) [75465:76106](+) petD [76278:76286](+) [77025:77501](+) rpl16 [82578:82586](-) [81043:81441](-) rpl2 [85371:85761](-) [84279:84712](-) ndhB [96545:97321](-) [95111:95866](-) ndhA [117485:118037](-) [115876:116414](-) ndhB_copy2 [144186:144962](+) [145641:146396](+) trnK-UUU [4078:4114](-) [1540:1575](-) trnG-GCC [8564:8584](+) [9286:9332](+) trnL-UAA [46212:46246](+) [46743:46792](+) trnV [50959:50993](-) [50339:50364](-) trnI [102967:102998](+) [103948:103987](+) trnA-UGC [104052:104088](+) [104895:104930](+) trnA-UGC_copy2 [137419:137455](-) [136577:136612](-) trnI_copy2 [138509:138540](-) [137520:137559](-) 4 gene(s) have 2 intron(s) Genes Exons rps12 [69535:69648](-) [98730:98961](-) [98165:98190](-) ycf3 [43494:43617](-) [42532:42761](-) [41631:41783](-) rps12_copy2 [69535:69648](-) [142546:142777](+) [143317:143342](+) clpP [71734:71802](-) [70673:70963](-) [69820:70065](-)