1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhF_copy2, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps15, rps18, rps19, rps2, rps3, rps4, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK, matK_copy2 Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor None Conserved open reading frames ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome rpl23, rpl32 Small subunit of ribosome rps16, rps7 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf2 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [48501:48659](+) [49382:49792](+) clpP (1/3) [64539:65513](+) ndhA (2/2) [120755:121325](-) [118838:119376](-) ndhB (2/2) [92761:93537](-) [91309:92064](-) petB (2/2) [76612:76617](+) [76874:77515](+) petD (2/2) [77732:77739](+) [78594:79068](+) rpl16 (2/2) [84394:84402](-) [82968:83366](-) rpl2 (2/2) [87545:87943](-) [86443:86877](-) rpoC1 (1/2) [38544:40619](+) rps12 (2/3) [66546:66659](+) [94431:94688](-) ycf3 (2/3) [14286:14411](+) [15181:15561](+) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rpoB ATT accD ATA ndhG CTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 119 genes (106 unique genes). Including: 74 protein-coding genes (72 are unique) 37 tRNA genes (30 are unique) 8 rRNA genes (4 are unique) Details are as follows: 74 protein-coding genes (72 are unique) Genes Length Location accD 3519 [55719:59237](+) atpA 1512 [49843:51354](+) atpB 1497 [4987:6483](+) atpE 402 [6480:6881](+) atpF 570 [48501:48659](+) [49382:49792](+) atpH 246 [47702:47947](+) atpI 744 [46225:46968](+) ccsA 975 [113356:114330](+) cemA 690 [61919:62608](+) clpP 975 [64539:65513](+) matK 1542 [106850:108391](+) matK_copy2 1542 [126444:127985](-) ndhA 1110 [120755:121325](-) [118838:119376](-) ndhB 1533 [92761:93537](-) [91309:92064](-) ndhC 363 [11716:12078](-) ndhD 1503 [114700:116202](-) ndhE 306 [116841:117146](-) ndhF 2232 [109619:111850](-) ndhF_copy2 2232 [122985:125216](+) ndhG 474 [117443:117916](-) ndhH 1182 [121327:122508](-) ndhI 495 [118260:118754](-) ndhJ 477 [10387:10863](-) ndhK 681 [10975:11655](-) petA 963 [62845:63807](+) petB 648 [76612:76617](+) [76874:77515](+) petD 483 [77732:77739](+) [78594:79068](+) petG 114 [70786:70899](-) petL 96 [71084:71179](-) petN 90 [33023:33112](-) psaA 2253 [16651:18903](+) psaB 2205 [18929:21133](+) psaC 246 [116341:116586](-) psaI 114 [59690:59803](+) psaJ 135 [69724:69858](-) psbA 1062 [772:1833](-) psbB 1527 [73475:75001](+) psbC 1422 [23479:24900](-) psbD 1062 [24848:25909](-) psbE 252 [72260:72511](+) psbF 120 [72521:72640](+) psbH 222 [75611:75832](+) psbI 111 [53700:53810](-) psbJ 123 [72946:73068](+) psbK 186 [54660:54845](-) psbL 117 [72670:72786](+) psbM 105 [32532:32636](+) psbN 132 [75365:75496](-) psbT 102 [75179:75280](+) psbZ 189 [22525:22713](-) rbcL 1437 [2674:4110](-) rpl14 369 [82416:82784](-) rpl16 408 [84394:84402](-) [82968:83366](-) rpl2 834 [87545:87943](-) [86443:86877](-) rpl20 360 [67650:68009](+) rpl22 417 [85385:85801](-) rpl33 213 [69010:69222](-) rpl36 114 [80984:81097](-) rpoA 1035 [79322:80356](-) rpoB 3222 [35292:38513](+) rpoC1 2076 [38544:40619](+) rpoC2 4170 [40770:44939](+) rps11 402 [80452:80853](-) rps12 372 [66546:66659](+) [94431:94688](-) rps14 303 [21204:21506](+) rps15 261 [122628:122888](-) rps18 492 [68267:68758](-) rps19 294 [86082:86375](-) rps2 714 [45277:45990](+) rps3 774 [84587:85360](-) rps4 645 [12909:13553](+) rps8 408 [81640:82047](-) ycf3 507 [14286:14411](+) [15181:15561](+) ycf4 555 [60318:60872](+) 37 tRNA genes (30 are unique) Genes Location trnH-GUG [137:211](-) trnM-CAU [7175:7247](-) trnV-UAC [7437:7475](+) [8080:8114](+) trnL-UAA [9136:9170](+) [9538:9587](+) trnF-GAA [9776:9848](+) trnT-UGU [12449:12521](+) trnS-GGA [13872:13958](-) trnfM-CAU [21674:21747](+) trnG-GCC [21808:21878](-) trnS-UGA [23116:23208](+) trnT-GGU [29761:29832](-) trnE-UUC [30845:30917](+) trnY-GUA [30977:31060](+) trnD-GUC [31597:31670](+) trnC-GCA [33966:34036](-) trnR-UCU [51590:51661](-) trnG-UCC [52716:52738](-) [51941:51988](-) trnS-GCU [53408:53495](+) trnQ-UUG [55276:55347](+) trnP-UGG [70334:70407](+) trnW-CCA [70606:70679](+) trnR-UCU_copy2 [71488:71559](+) trnI-CAU [88433:88506](-) trnL-CAA [90963:91043](-) trnV-GAC [96535:96606](+) trnI-GAU [98814:98850](+) [99808:99842](+) trnA-UGC [99907:99944](+) [100772:100806](+) trnR-ACG [104805:104878](+) trnN-GUU [105015:105086](-) trnK-UUU [106783:106820](+) [108420:108457](+) trnL-UAG [113144:113223](+) trnK-UUU_copy2 [128015:128052](-) [126378:126415](-) trnN-GUU_copy2 [129749:129820](+) trnR-ACG_copy2 [129957:130030](-) trnA-UGC_copy2 [134891:134928](-) [134029:134063](-) trnI-GAU_copy2 [135985:136021](-) [134993:135027](-) trnV-GAC_copy2 [138229:138300](-) 8 rRNA genes (4 are unique) Genes Location rrn16 [97022:98516](+) rrn23 [100959:104185](+) rrn4.5 [104283:104385](+) rrn5 [104613:104733](+) rrn5_copy2 [130102:130222](-) rrn4.5_copy2 [130450:130552](-) rrn23_copy2 [130650:133876](-) rrn16_copy2 [136319:137813](-) This genome has 18 genes with intron(s). Details are as follows: 18 gene(s) have 1 intron(s) Genes Exons ycf3 [14286:14411](+) [15181:15561](+) atpF [48501:48659](+) [49382:49792](+) rps12 [66546:66659](+) [94431:94688](-) petB [76612:76617](+) [76874:77515](+) petD [77732:77739](+) [78594:79068](+) rpl16 [84394:84402](-) [82968:83366](-) rpl2 [87545:87943](-) [86443:86877](-) ndhB [92761:93537](-) [91309:92064](-) ndhA [120755:121325](-) [118838:119376](-) trnV-UAC [7437:7475](+) [8080:8114](+) trnL-UAA [9136:9170](+) [9538:9587](+) trnG-UCC [52716:52738](-) [51941:51988](-) trnI-GAU [98814:98850](+) [99808:99842](+) trnA-UGC [99907:99944](+) [100772:100806](+) trnK-UUU [106783:106820](+) [108420:108457](+) trnK-UUU_copy2 [128015:128052](-) [126378:126415](-) trnA-UGC_copy2 [134891:134928](-) [134029:134063](-) trnI-GAU_copy2 [135985:136021](-) [134993:135027](-)